PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma133g00320.1
Common NameZOSMA_133G00320
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family C2H2
Protein Properties Length: 624aa    MW: 67737.8 Da    PI: 8.9355
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma133g00320.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.13.3e-0586108123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       + C+ C+k F r  nL+ H r H
  Zosma133g00320.1  86 FICEVCNKGFQREQNLQLHRRGH 108
                       89*******************88 PP
2zf-C2H212.40.00048162184123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       +kC +C+k++  +s+ k H +t+
  Zosma133g00320.1 162 WKCDKCSKRYAVQSDWKAHSKTC 184
                       58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.65E-785108No hitNo description
Gene3DG3DSA:3.30.160.607.0E-685108IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.005286108IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.9986108IPR007087Zinc finger, C2H2
PfamPF121713.1E-586108IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS00028088108IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.2E-4150183IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.65E-7157182No hitNo description
SMARTSM00355140162182IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 624 aa     Download sequence    Send to blast
MAASSSSSPF FGIGGDEDLR NQINQQQHRQ KLLPTTPTSL PPSQPHPPPL ITPPLPKKKR  60
NQPGTPYPDA EVIALSPKTL MATNRFICEV CNKGFQREQN LQLHRRGHNL PWKLKQKSTK  120
EVRRRVYLCP EPTCVHHDPS RALGDLTGIK KHFCRKHGEK KWKCDKCSKR YAVQSDWKAH  180
SKTCGTREYR CDCGTLFSRR DSFITHRAFC DALAQESARI PSGLNTIGGH NHLYGSNLHN  240
MGLGLSNQIN SQIPSYLLGG GGGGSTQLDH MMAASSNHPS FRLSAPTAQA GSQSPFFFGS  300
GGGIQDFNDD HNNNKGFHHG LMHLPDLQTG NDNHVNTPSP AAAAAAATFF NLSFFNNDRS  360
SNHNNSNSNN QQNSANLFVS SGGSNEQSNI FSGNLIGENS TGLGVSSLYN NNSSLASNES  420
AILPQMSATA LLQKAAQMGA TTTTSNINNG SFGSSSSTSN INAKQTNLRS HLDQNEAQIQ  480
ALMSSLASGN SSIFGTNINN SQFRSGNGRE QQQHVHDEQH RQQHRQEQET CTEGYAGFNT  540
NLSILDDSKL HQNLSIGSMG GSDRLTRDFL GVGGMVRNPL RGHMHLHQHQ HGLEIDCLNP  600
EMKSAAANAA ARSYSSDLGG SLQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-34158222367Zinc finger protein JACKDAW
5b3h_F1e-34158222367Zinc finger protein JACKDAW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010270755.10.0PREDICTED: protein indeterminate-domain 5, chloroplastic-like
RefseqXP_010270757.10.0PREDICTED: protein indeterminate-domain 5, chloroplastic-like
TrEMBLA0A0K9Q0Z50.0A0A0K9Q0Z5_ZOSMR; Putative Zinc finger protein
STRINGXP_010270754.10.0(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17333798
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02070.11e-113indeterminate(ID)-domain 5