PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma133g00330.1

Common Name

ZOSMA_133G00330

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

NF-YB

Protein Properties

Length: 156aa MW: 17486 Da PI: 4.3659

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma133g00330.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	76	5.7e-24	11	93	3	85
NF-YB 3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkv 85 ++d lP a + +i+k++lPa+ ++++d+++++ ec +efi +++se+++ c re++kti+++ +l al lGf dy+e++ + Zosma133g00330.1 11 KEDVSLPKATMCKIIKEMLPAEVRVARDTQDLLVECCVEFINLISSESNEVCSREEKKTIAPEHVLKALEVLGFGDYIEEVYT 93 68999*************************************************************************98754 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	7.8E-38	8	140	IPR009072	Histone-fold
SuperFamily	SSF47113	4.51E-33	12	139	IPR009072	Histone-fold
Pfam	PF00808	6.7E-20	15	79	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 156 aa Download sequence Send to blast
MEPMDIVGKS KEDVSLPKAT MCKIIKEMLP AEVRVARDTQ DLLVECCVEF INLISSESNE 60 VCSREEKKTI APEHVLKALE VLGFGDYIEE VYTAYEQHKL ETLDSPKGGK MITLEMTEEQ 120 AVAEQQRMFA EARARMNNGS NPLKEETNLN QSLDC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_B	1e-34	12	133	12	133	Transcription Regulator NC2 beta chain
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020259356.1	1e-89	protein Dr1 homolog
Refseq	XP_020259357.1	1e-89	protein Dr1 homolog
Swissprot	P49592	8e-75	NC2B_ARATH; Protein Dr1 homolog
TrEMBL	A0A0K9PYQ9	1e-110	A0A0K9PYQ9_ZOSMR; Nuclear transcription factor Y subunit B-1
STRING	GSMUA_Achr9P00790_001	1e-86	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5720	35	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23090.4	6e-79	nuclear factor Y, subunit B13

Link Out ? help Back to Top
Phytozome	Zosma133g00330.1

Publications ? help Back to Top
Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]