PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma134g00070.1
Common NameZOSMA_134G00070, ZOSMA_140G00360
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family GATA
Protein Properties Length: 156aa    MW: 17399 Da    PI: 10.4119
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma134g00070.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA32.89.7e-114674735
              GATA  7 tkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                      t T lWR+gp  ++ LCnaCG  ++ kg+
  Zosma134g00070.1 46 TATCLWRNGPPEKSVLCNACGSSWKTKGT 74
                      6799******99999***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004010.00744186IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.09E-64578No hitNo description
Gene3DG3DSA:3.30.50.102.0E-84574IPR013088Zinc finger, NHR/GATA-type
PfamPF003203.2E-94674IPR000679Zinc finger, GATA-type
CDDcd002022.99E-84687No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MIPTIVLFSL FSQKLFDAID ISNVAKSKIN GQAGAMFSLW HHESITATCL WRNGPPEKSV  60
LCNACGSSWK TKGTLASYMP RNARGPSLTS YKTKKSSTAD NRKDKGKSKK EPPSKHSQKR  120
SALCENKEDN DVDDTDWNNI LDLKKKKIIK QHLKF*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9PXQ81e-110A0A0K9PXQ8_ZOSMR; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.19e-17GATA transcription factor 26