PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma135g00520.1
Common NameZOSMA_135G00520
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family ERF
Protein Properties Length: 186aa    MW: 21230 Da    PI: 8.6565
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma135g00520.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.82.7e-183987355
               AP2  3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                      y+G+r+++ +g+W+AeIrdp+    +  r++lg+f taeeAa+a+++   +++g
  Zosma135g00520.1 39 YRGIRQRP-WGKWAAEIRDPV----KgVRVWLGTFQTAEEAARAYDRESIRIRG 87
                      9*******.**********75....44*******************98888776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.4593895IPR001471AP2/ERF domain
SMARTSM003802.7E-3538101IPR001471AP2/ERF domain
SuperFamilySSF541713.6E-223896IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.109.7E-323896IPR001471AP2/ERF domain
CDDcd000188.42E-333996No hitNo description
PfamPF008473.3E-113980IPR001471AP2/ERF domain
PRINTSPR003673.2E-123950IPR001471AP2/ERF domain
PRINTSPR003673.2E-126177IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MCGGAVLSDL IISGNSRKRE ETKIVGKKRG RDGGKKNLYR GIRQRPWGKW AAEIRDPVKG  60
VRVWLGTFQT AEEAARAYDR ESIRIRGKKA KVNFPNEEFN FNFTEIAQSP ILTVTTPEVT  120
EKEKEEKTNK SNWVSSDQLR EIEGYMKFLD EMPYQQEIYG DVCSQATGDF NSQLWNFDDI  180
LPLSI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-243595263ATERF1
3gcc_A5e-243595263ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009387936.11e-44PREDICTED: ethylene-responsive transcription factor ERF071-like
TrEMBLA0A0K9PYL31e-134A0A0K9PYL3_ZOSMR; Uncharacterized protein
STRINGGSMUA_AchrUn_randomP27100_0014e-44(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47520.11e-34ERF family protein