PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma136g00380.1

Common Name

ZOSMA_136G00380

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

Dof

Protein Properties

Length: 240aa MW: 26704.2 Da PI: 9.5904

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma136g00380.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	119	1.8e-37	68	127	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++++l+cprC+s ntkfCy+nny+++qPr+fC++C+ryWt+GG++r vPvG+grrknk+s Zosma136g00380.1 68 PDRKLPCPRCNSVNTKFCYFNNYNINQPRHFCRNCQRYWTAGGSMRKVPVGAGRRKNKSS 127 78899****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	6.0E-27	60	125	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	5.9E-31	70	126	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.36	72	126	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	74	110	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 240 aa Download sequence Send to blast
MAQNSMSMVK LFGRNIKAAA EGEYKTPPPS EEKKKRSCYL KEGKEEENDD GGGSNSNSRE 60 IKTVIKKPDR KLPCPRCNSV NTKFCYFNNY NINQPRHFCR NCQRYWTAGG SMRKVPVGAG 120 RRKNKSSITT GVPVGDMGPC KMNQEDEPPS IYTCNNPPTF WIPTPWMASQ FPSMPDKKVK 180 TDDSSSRTTT SASAWLTIGT NSKCDGFFKD FFNPKDQLSP DAMHTNPAAL SRSLSLETT*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0K9Q0V0	1e-178	A0A0K9Q0V0_ZOSMR; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2099	37	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26790.1	2e-35	Dof family protein

Link Out ? help Back to Top
Phytozome	Zosma136g00380.1