PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma138g00110.1

Common Name

ZOSMA_138G00110

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

HB-other

Protein Properties

Length: 126aa MW: 15048.2 Da PI: 8.5046

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma138g00110.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	63.1	4.2e-20	5	55	6	56
S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++t+ q+eeLe++F k+ +ps +er+eL++kl+L+ qVk+WFqNrR ++k Zosma138g00110.1 5 RHTPRQVEELEAFFVKCDHPSVKERQELSEKLDLEMHQVKFWFQNRRNQMK 55 579********************************************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	15.694	1	57	IPR001356	Homeobox domain
SMART	SM00389	9.7E-15	1	61	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.59E-17	4	65	IPR009057	Homeodomain-like
CDD	cd00086	4.55E-14	4	57	No hit	No description
Gene3D	G3DSA:1.10.10.60	6.4E-19	5	62	IPR009057	Homeodomain-like
Pfam	PF00046	1.3E-17	5	55	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	32	55	IPR017970	Homeobox, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 126 aa Download sequence Send to blast
MTTYRHTPRQ VEELEAFFVK CDHPSVKERQ ELSEKLDLEM HQVKFWFQNR RNQMKVQLGR 60 QNNCFLREEN VRLRAENELL WETMKKPLCK DCGNPSMEGQ RLRAENIRLK EEINRFCSSI 120 NGTGF*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015877999.1	1e-41	homeobox-leucine zipper protein ANTHOCYANINLESS 2-like
Swissprot	Q6EPF0	1e-40	ROC5_ORYSJ; Homeobox-leucine zipper protein ROC5
TrEMBL	A0A0K9PYG1	2e-87	A0A0K9PYG1_ZOSMR; Uncharacterized protein
STRING	Gorai.004G120700.1	1e-40	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP14930	16	19

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00730.2	3e-39	HD-ZIP family protein

Link Out ? help Back to Top
Phytozome	Zosma138g00110.1

Publications ? help Back to Top
Zou LP, et al. Leaf rolling controlled by the homeodomain leucine zipper class IV gene Roc5 in rice. Plant Physiol., 2011. 156(3): p. 1589-602 [PMID:21596949] Chou IT,Gasser CS Characterization of the cyclophilin gene family of Arabidopsis thaliana and phylogenetic analysis of known cyclophilin proteins. Plant Mol. Biol., 1997. 35(6): p. 873-92 [PMID:9426607]