PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma13g01240.1
Common NameZOSMA_13G01240
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family MYB_related
Protein Properties Length: 650aa    MW: 72700.2 Da    PI: 8.9592
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma13g01240.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.92e-07550599147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
  Zosma13g01240.1 550 RRPFSVSEVEALVHAVEKLGTGRWRDVKIRAFdnaKHRTYVDLKDKWKTL 599
                      678999********************9999989**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.223545604IPR017930Myb domain
SMARTSM007173.5E-7549602IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.2E-10550600IPR009057Homeodomain-like
SuperFamilySSF466892.06E-15551632IPR009057Homeodomain-like
CDDcd116601.58E-16551601No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 650 aa     Download sequence    Send to blast
MVFPKRIYYG FKDFQPSSLP KGSRSSRGRR AAPGNIDRGN DMFAFNLLAT VAGNLLNDKE  60
TQDQPSNLTA KEMKSIVKHE LQNDNELPKF EPCDQGSCDE GKPNCETLCK PFISQGFVMK  120
DCSEASSSVV VPPVVAKLEA NEKSSYESTV DTGKIDKQAS LSAEREKDGD AGSGNRFRSD  180
EIITNLLCAE DIQDLDLKPP PNLVSSDSSV ELPPYQKQNY TGFDTSIPNR RVDVKFSNRY  240
NDQNSSRCYP SDIINSNGFK SQCIGGDRKI KKSSEAVFRK VKTSRQNETK CMFRSGQMYY  300
AGQKIQKSSF KRRKFFERFT SASHQGEMKS DMFSMSPEKS LKGETSSSAT ALNAQTLKLK  360
PDEHNVKCSI KSFMVPEVII NMPDSATIGE LKRRTEDALT NLLHYGLQVG IALQGKKISD  420
DSKTLHQIGI TDTAKFGSLG FSLEVNSDYQ HCPQPSDASE PVSWFPVSVP SDICMKGTQE  480
DFTCQPDAAR IIKKPKTGFD LFPLAKTEMQ DTSKEDVNAL AVVPVLNSDP LSVIPLRKSK  540
RSELVQRRIR RPFSVSEVEA LVHAVEKLGT GRWRDVKIRA FDNAKHRTYV DLKDKWKTLV  600
HTARISPQQR RGEPVPQELL DRVLSAHAYW SQQQARSQIK HEPEQHILA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A7e-565386405107Telomere binding protein TBP1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9PY130.0A0A0K9PY13_ZOSMR; Telomere repeat-binding protein 5
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP5245714
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-90TRF-like 2