PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma141g00210.1
Common NameZOSMA_141G00210
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family ERF
Protein Properties Length: 176aa    MW: 19856.2 Da    PI: 6.2917
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma141g00210.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.12.5e-1951100154
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54 
                       + y+GVr++  +g+WvAeIr+p   + r kr +lg+f t  +Aa+a+++a+k+++
  Zosma141g00210.1  51 CNYRGVRQRT-WGKWVAEIREP---N-RgKRLWLGTFPTSLDAARAYDEAAKAMY 100
                       56*****999.**********8...3.35***********************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.5E-1451100IPR001471AP2/ERF domain
CDDcd000184.56E-3051111No hitNo description
PROSITE profilePS5103221.04852109IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-2952109IPR001471AP2/ERF domain
SMARTSM003801.7E-3252115IPR001471AP2/ERF domain
SuperFamilySSF541713.53E-2052110IPR016177DNA-binding domain
PRINTSPR003678.8E-105364IPR001471AP2/ERF domain
PRINTSPR003678.8E-107591IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0010286Biological Processheat acclimation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MATLEKWKQL NYQLENGKDG EEKAHKPVKP PAKGSRKGCM KGKGGPDNSN CNYRGVRQRT  60
WGKWVAEIRE PNRGKRLWLG TFPTSLDAAR AYDEAAKAMY SSSARLNLNT SPAIHEVNKE  120
NEKIQEEQEE QGEQDISYML DDLSDIIDIN EIMGSVKMEQ PRDLHDGKSD SEAFR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-1552108562ATERF1
3gcc_A2e-1552108562ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00302DAPTransfer from AT2G40340Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020267191.15e-51dehydration-responsive element-binding protein 2B-like
SwissprotA2WL195e-45DRE2A_ORYSI; Dehydration-responsive element-binding protein 2A
TrEMBLA0A0K9PXV41e-128A0A0K9PXV4_ZOSMR; Putative dehydration-responsive element-binding protein 2H
STRINGXP_002520794.18e-49(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP73153551
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40350.16e-36ERF family protein