PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma144g00340.1
Common NameZOSMA_144G00340
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family ARF
Protein Properties Length: 1068aa    MW: 119401 Da    PI: 6.3919
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma144g00340.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B365.86.5e-21140241199
                       EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                       f+k+lt sd++++g +++p++ ae++       ++++ +  +l+ +d++ + W++++iyr++++r++lt+GW+ Fv+ ++L +gD+++F +d 
  Zosma144g00340.1 140 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfsMQPPVQ--ELQARDLHANLWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSILFIRD- 229
                       99*****************************95444444..8************************************************54. PP

                       SSEE..EEEEE-S CS
                B3  87 rsefelvvkvfrk 99 
                        ++ +l+++++r+
  Zosma144g00340.1 230 -ENSQLLLGIRRA 241
                       .566669999997 PP
2Auxin_resp1141.4e-37266349183
        Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                       aahaa+++++F+++YnPr+s+seFv++++k++ka++ +++s+GmRf+m+fete+s +rr++Gtv+g+sdldpvrW+nS+W +L+
  Zosma144g00340.1 266 AAHAAANSTPFTIFYNPRVSPSEFVIPLAKYNKAIYsNQLSLGMRFRMMFETEESGTRRYMGTVTGISDLDPVRWKNSQWCNLQ 349
                       79*********************************989******************************************9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.5E-40131254IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.05E-40133269IPR015300DNA-binding pseudobarrel domain
CDDcd100172.54E-18139240No hitNo description
PfamPF023623.4E-19140241IPR003340B3 DNA binding domain
PROSITE profilePS5086311.716140242IPR003340B3 DNA binding domain
SMARTSM010191.3E-21140242IPR003340B3 DNA binding domain
PfamPF065073.8E-32266349IPR010525Auxin response factor
PfamPF023091.0E-97261016IPR033389AUX/IAA domain
PROSITE profilePS5174525.6479311015IPR000270PB1 domain
SuperFamilySSF542777.36E-79461010No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1068 aa     Download sequence    Send to blast
MKGQQGNNVF VAPTVTPTSG EGGGGEKKST INSELWHACA GPLVSLPPVG SLVVYFPQGH  60
SEQVAASMQK DVKAPIPNYP NLPSKLICLL HSVTLHADAE TDEVYARMSL QPVNPQQQNT  120
TLLSTDYGLK SNNKPQPEFF CKTLTASDTS THGGFSVPRR AAEKIFPPLD FSMQPPVQEL  180
QARDLHANLW TFRHIYRGQP KRHLLTTGWS LFVSGKRLFA GDSILFIRDE NSQLLLGIRR  240
ANRQPTNISS SVLSCDSMYI GILAAAAHAA ANSTPFTIFY NPRVSPSEFV IPLAKYNKAI  300
YSNQLSLGMR FRMMFETEES GTRRYMGTVT GISDLDPVRW KNSQWCNLQV GWDETSVGER  360
RNRVSLWEIE PVSAPFFICP PPIFRSKRPR QPGMPDDEPS DMDNLFKRAM PWLGDEICIK  420
DSQFQNAGGM PGLSLVQWMN MQQNAQNPPV VIKNTQPDYF CPTSVTRGPD LQNQILQQNQ  480
FNGDSNNKPP QPPSQQRQQD VLQLNQNLQA STLNQQINQT QNNHHLQSPS LVHHNFQSSQ  540
STALQNQKLQ APLQQQQYIL QQKQQQQQKC QIPTQIPPQV NQQFDLPEQH IHFQILQKIQ  600
QQQKQQQSLI IQTPPQHRVH ENQHKTILEN PEVSQHHKII TQQQSSATNV YNVVGSSHIS  660
QSTQHPILKS PQLQRNMTEE LTGNLIMPPT SGGEQLTTFV NDVLQPETNN GSSNSTTFMH  720
NTDRVKSVAS MQILSPGNLK ANTTVDEVEK SEKHSKSSSM FIPSEEQIPG TFGTQIDHLE  780
SSNSGTSVCL SQTDVQMQHQ TCIPMSPFNH SFLFRDTTGL DEIQTGDLRN NVLFGVNIDD  840
SPLCAPDTTD NFLIKGIDSD KDFQNNISID NLLAEANYNT TKEAQQEISS SIVSQSLGVP  900
DAAAFNSIDS SLNDNCFLNK WSSAPKIQRL RTYTKVYKRG AVGRSIDISR YSGYNELKQD  960
LSRMFSIEGQ IEDKQRIGWK LVYVDHENDV LLVGDDPWEE FVICVRCIRI LSPQEVEQMS  1020
LDGDLGGNAC VSNQACSSSG GGNAWRDQQQ FDQNSGNLPY AGFYDQL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1682537045388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023876353.10.0auxin response factor 19-like
SwissprotQ6Z2W30.0ARFE_ORYSJ; Auxin response factor 5
TrEMBLA0A0K9PXA60.0A0A0K9PXA6_ZOSMR; Auxin response factor
STRINGLPERR02G03100.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140935106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19