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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | Zosma147g00040.1 | ||||||||
| Common Name | ZOSMA_147G00040 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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| Family | FAR1 | ||||||||
| Protein Properties | Length: 141aa MW: 15948.6 Da PI: 11.299 | ||||||||
| Description | FAR1 family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
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| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | FAR1 | 53.4 | 8.7e-17 | 17 | 106 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90
+fY YA ++GFsv+ks+++++ + t++t+vCskegk++ + +k +r + rt Ckak++ + d+ w v + HnH la
Zosma147g00040.1 17 NFYYGYAGRIGFSVCKSTTSSN--AHGLTRYTLVCSKEGKSNAIIPSsntLSKIKRIPRNPRTRCKAKITFVVQ-DNIWLVPIWITSHNHLLA 106
6***************987776..5559************996433333367778888899**********999.9**************986 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Pfam | PF03101 | 1.2E-14 | 17 | 106 | IPR004330 | FAR1 DNA binding domain |
| Sequence ? help Back to Top |
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| Protein Sequence Length: 141 aa Download sequence Send to blast |
MMIRRSMSFT TLEAAENFYY GYAGRIGFSV CKSTTSSNAH GLTRYTLVCS KEGKSNAIIP 60 SSNTLSKIKR IPRNPRTRCK AKITFVVQDN IWLVPIWITS HNHLLAKPSK RRFLPTNRKI 120 IPHTRNIIHY LEASNIAPSQ * |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
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| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| TrEMBL | A0A0K9PX35 | 7e-99 | A0A0K9PX35_ZOSMR; Uncharacterized protein | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G38180.1 | 1e-13 | FAR1-related sequence 5 | ||||
| Link Out ? help Back to Top | |
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| Phytozome | Zosma147g00040.1 |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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