PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma147g00360.1
Common NameZOSMA_147G00360
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family B3
Protein Properties Length: 905aa    MW: 100261 Da    PI: 7.6688
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma147g00360.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.91.4e-16380478197
                       EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                       f+k+l+ sd+++ grlvlpk +ae++   ++++e++ l+++d +g+ W +++++  +++s++yvl+ G     ++ +L++gD+v+F++++ ++
  Zosma147g00360.1 380 FEKILSASDAGRIGRLVLPKACAEAYfpPISHPEGVPLKIQDVKGNNWVFQFRFwpNNNSRMYVLE-GVTPWIQSWQLQAGDTVTFSRMEPMG 471
                       99**************************777789999***************9989999999***9.********************877444 PP

                       E..EEEEE CS
                B3  90 felvvkvf 97 
                       + l ++++
  Zosma147g00360.1 472 K-LIMGFR 478
                       4.555544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.5E-28372490IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.62E-20377481IPR015300DNA-binding pseudobarrel domain
CDDcd100172.72E-21378479No hitNo description
PfamPF023627.6E-14380478IPR003340B3 DNA binding domain
SMARTSM010196.8E-18380480IPR003340B3 DNA binding domain
PROSITE profilePS5086310.433380481IPR003340B3 DNA binding domain
PROSITE profilePS5105013.718629679IPR011124Zinc finger, CW-type
PfamPF074963.0E-11634676IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010030Biological Processpositive regulation of seed germination
GO:2000034Biological Processregulation of seed maturation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 905 aa     Download sequence    Send to blast
MEEIDSGGNK CMNVVCGLQL PDGQWNKGWM LRSGSFAALC NSCGMAYDKM VFCDIYHSLE  60
TGWRECHSCS KRLHCGCIVS KSSMELLDSG GVQCTNCVNF KQTPKLHGQC LQSSIHTALP  120
VPNHQQIMHT SEPSPISADF LQQWVSTSPT KVVISVPLES NASLRQRDSC DGNMYNGTNG  180
KIKCVSRNTE VNRQSRSNNS HGHTKREPSM PSVGDCGTLG ISSTNQALNV PSDISRIDET  240
KYDSTDNVTS EAQPHASLVM TLGTSIQHNH QSMDSFCNSG NSNNPLPASN TVVDEREHNN  300
LLPTISQIQR SRHLISKPSK TCHSPSLDTS NDMLSHMRVA RPPGDGRGRS QLLPRYWPRI  360
TDEELQQMTG DSNSTIVPLF EKILSASDAG RIGRLVLPKA CAEAYFPPIS HPEGVPLKIQ  420
DVKGNNWVFQ FRFWPNNNSR MYVLEGVTPW IQSWQLQAGD TVTFSRMEPM GKLIMGFRKA  480
TSSVQMQDSQ ISAMTNGTDF NENCVNTENL PIISGYPGPH QSLKVSIASQ LCNFSEADGD  540
KSSYKVNKRA SSIEQLQKKG SHIGSKSKRL HIDHGDALEL KLTWEEAQDL LRPPLSEKPS  600
IVVIENHEFE EYEEPPVLGK RTIFTSQTSG VYDQWAQCDS CYKWRRLPAD VLLASKWTCA  660
ENLWDSQRSS CDISSEMKKK DIQNLLQMNK DLRKRNIGAK LKVSTEEEAS SGLDALASIA  720
TFGDDTTILL PPSTAKTTKH PRHRAGCSCI VCIQPPSGKG PKHKSTCTCN VCTSVKRRFN  780
TLMLRKKKRQ SGEHDEEQSL KILSWTPSSS EDLSKNASGS SLDTHLSKSV SEFSRAVILE  840
NFDKSNGHLN LNSHPMQVEG NIVHSKMVDH SQQMKFTEDS VDGQKNPDQS TSPDVGYIGS  900
EKRH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A2e-633584872131B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1775788KRRFNTLMLRKKKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010252057.10.0PREDICTED: B3 domain-containing protein Os07g0679700-like isoform X1
TrEMBLA0A0K9PX580.0A0A0K9PX58_ZOSMR; Putative Transcription factor
STRINGXP_010252057.10.0(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP65193748
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.11e-170HSI2-like 1