PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma149g00100.1
Common NameZOSMA_149G00100
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family bHLH
Protein Properties Length: 227aa    MW: 24961.5 Da    PI: 9.7541
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma149g00100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.97.5e-135197354
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                      ++h+e+ErrRR+riN  +++Lr+llP a      K++Ka+ L+++v+ +++L
  Zosma149g00100.1 51 KSHSEAERRRRQRINGHLATLRTLLPDA-----IKMDKASLLTEVVRQVREL 97
                      68*************************9.....7***********9988877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.374897IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.23E-1349107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.27E-125199No hitNo description
Gene3DG3DSA:4.10.280.101.1E-125199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-105197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.8E-1054103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550217.5E-8133201No hitNo description
Gene3DG3DSA:3.30.70.2604.9E-8134200No hitNo description
PROSITE profilePS516718.551135218IPR002912ACT domain
CDDcd048734.90E-6136201No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0003677Molecular FunctionDNA binding
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MIPAGEGDGM EMVMEMMNSS ASAATTNNTD HSMWMSNLIN AGSNVNRRVT KSHSEAERRR  60
RQRINGHLAT LRTLLPDAIK MDKASLLTEV VRQVRELKKY ADDVSALSPD TWNGLVPGEA  120
DEVRMTAAEE TGLVRVSVCC EDRPGLMTEV NQAIRSVQAR VVKAEMATVG GRTKSVVVFQ  180
GQVNGEDRSM LHASLRSILQ KPDSTRNHGF VEKKRLPFSR PLTISQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010254503.12e-50PREDICTED: transcription factor bHLH30-like
RefseqXP_010254504.12e-50PREDICTED: transcription factor bHLH30-like
RefseqXP_010254505.12e-50PREDICTED: transcription factor bHLH30-like
TrEMBLA0A0K9PYV81e-166A0A0K9PYV8_ZOSMR; Basic helix-loop-helix (BHLH) DNA-binding superfamily
STRINGXP_010254503.18e-50(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP41143569
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38070.12e-31bHLH family protein