PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma14g00200.1

Common Name

ZOSMA_14G00200

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

bHLH

Protein Properties

Length: 225aa MW: 25567.4 Da PI: 9.9641

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma14g00200.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	22.1	2.8e-07	48	101	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-..STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskK..lsKaeiLekAveYIksL 54 +h +ErrRR+++ + f Lr ++ + s+ + K K +Le Av I++L Zosma14g00200.1 48 THTDVERRRREKLSKLFIALRHVVQTnKSSSQIIKrsTIKTLVLEDAVAVINEL 101 89************************6654444440355666689999999988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.045	44	101	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.83E-8	47	119	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.8E-5	48	101	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	8.85E-5	48	105	No hit	No description
Gene3D	G3DSA:4.10.280.10	2.7E-8	48	122	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.9E-4	50	107	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0016021	Cellular Component	integral component of membrane
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 225 aa Download sequence Send to blast
MGLTHVGDML ILLILYIFTL NFHISVDLIP LIMSSPFLLA SLKITPITHT DVERRRREKL 60 SKLFIALRHV VQTNKSSSQI IKRSTIKTLV LEDAVAVINE LKTNITALEF EGEILRSQIK 120 SPERIDKIEK MGVMEHKLLN IEVTKVGKDV MLIRMQSDKM NHPAARLMTV LKELDFEIGF 180 ASLSVIENIT IQHVTILMSD TTDRILYTKD QLVTVLNAKL VRFH*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	52	57	ERRRRE
2	53	58	RRRREK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0K9PWF0	1e-158	A0A0K9PWF0_ZOSMR; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4452	31	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17880.1	9e-27	bHLH family protein

Link Out ? help Back to Top
Phytozome	Zosma14g00200.1