PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma14g00700.1
Common NameZOSMA_14G00700
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family C3H
Protein Properties Length: 332aa    MW: 37942 Da    PI: 7.7073
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma14g00700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.96.2e-12199224126
                      --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                      y   +C+++ +tG+C +Gd+CkF+H+
  Zosma14g00700.1 199 YQPDICKDYKETGYCGFGDSCKFMHD 224
                      67789********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902293.4E-9197229IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.878198226IPR000571Zinc finger, CCCH-type
SMARTSM003562.2E-7198225IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.8E-12199229IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-9199224IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.107.4E-14255312IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF578508.16E-13270313No hitNo description
PfamPF139202.3E-8270311No hitNo description
CDDcd001625.97E-8271312No hitNo description
SMARTSM001841.6E-4271308IPR001841Zinc finger, RING-type
PROSITE profilePS5008910.527271309IPR001841Zinc finger, RING-type
PROSITE patternPS005180286295IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MSADDQYPQS TEPVCNFFRK PTRNKNIRKR QTETDRDDDE VEKNEKQKLK TKKVVSSSAL  60
HFSSSNPQTS RTSHKNYGED DNNTDVSAVF HFESSKEIQV ENDSKATASL QTETEFDRDS  120
RALREKVLKK AGDALKRSGE ASNSATNTST KQLYSGIHGY TDYKAGFRRE QTVASEKAGG  180
SHGPLRTSAH IRASVRFDYQ PDICKDYKET GYCGFGDSCK FMHDRGDYKS GWQMEKEWEE  240
KEKLRKRALA MGEKEDDEDD DEDDDELPFA CFICRQPFVD PVVTKCKHYF CEHCALKHHS  300
KNKKCFVCNK PTLGMFNTAH EIKKRITADK K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M5e-6094326105317RING finger protein 113A
5z58_M5e-6094326105317RING finger protein 113A
6ff4_t5e-6094326105317RING finger protein 113A
6ff7_t5e-6094326105317RING finger protein 113A
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018827922.11e-152PREDICTED: zinc finger CCCH domain-containing protein 1-like isoform X3
SwissprotQ8GX841e-144C3H1_ARATH; Zinc finger CCCH domain-containing protein 1
TrEMBLA0A0K9PWK00.0A0A0K9PWK0_ZOSMR; Zinc finger CCCH domain-containing protein 1
STRINGCagra.1968s0078.1.p1e-151(Capsella grandiflora)
STRINGXP_010103154.11e-151(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80713645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.11e-130C3H family protein