PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma14g01480.1
Common NameZOSMA_14G01480
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family ERF
Protein Properties Length: 190aa    MW: 20089.4 Da    PI: 10.687
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma14g01480.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.11.4e-2060109255
              AP2   2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       y+GVr ++ +grW AeIrd       r r++lg+f+tae+Aa+a++aa+++l+g
  Zosma14g01480.1  60 SYRGVRKRP-WGRWSAEIRDrI----GRCRHWLGTFDTAEDAARAYDAAARSLRG 109
                      6********.**********32....25*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.2E-3060117IPR001471AP2/ERF domain
PfamPF008473.4E-1460109IPR001471AP2/ERF domain
SMARTSM003802.4E-3360123IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-2260118IPR016177DNA-binding domain
PROSITE profilePS5103222.70860117IPR001471AP2/ERF domain
CDDcd000182.29E-1761118No hitNo description
PRINTSPR003671.1E-106172IPR001471AP2/ERF domain
PRINTSPR003671.1E-108399IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
METNNPPPQL DGIAAVVGYY VLFGPQNNSL PLPPPPHSED DDGGGGGGGG KVVSASAGTS  60
YRGVRKRPWG RWSAEIRDRI GRCRHWLGTF DTAEDAARAY DAAARSLRGS KARTNFPAPP  120
SYLPVPVSSP YNSSSSCSSS SDAGTKSSSH PRKKRKSCAT TTKITGRRSV KKKTTKTYVV  180
TSLANLFTS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-2049117472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1166172RRSVKKK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004305488.12e-43PREDICTED: ethylene-responsive transcription factor ERF084
SwissprotQ9M8M54e-26ERF84_ARATH; Ethylene-responsive transcription factor ERF084
TrEMBLA0A0K9PWT11e-134A0A0K9PWT1_ZOSMR; Integrase-type DNA-binding superfamily protein
STRINGXP_004305488.19e-43(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2502245
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80580.12e-23ERF family protein