PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma14g01800.1
Common NameZOSMA_14G01800
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family FAR1
Protein Properties Length: 67aa    MW: 7436.32 Da    PI: 10.2359
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma14g01800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR133.81.1e-101155147
             FAR1  1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk 47
                     +fY  YA ++GF vrks+++++   +  t++t+vCskegk+++   +
  Zosma14g01800.1 11 NFYYGYADRIGFFVRKSTTSSN--AHGLTRHTLVCSKEGKNNTIIPS 55
                     6***************987776..5559************9976555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.1E-81161IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 67 aa     Download sequence    Send to blast
MSFTTLEDAE NFYYGYADRI GFFVRKSTTS SNAHGLTRHT LVCSKEGKNN TIIPSLNTSS  60
KKKRNT*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9PYU96e-41A0A0K9PYU9_ZOSMR; Uncharacterized protein