PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma150g00090.1
Common NameZOSMA_150G00090
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family FAR1
Protein Properties Length: 299aa    MW: 33695.5 Da    PI: 8.5408
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma150g00090.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR159.88.4e-19200289390
              FAR1   3 YneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                       Y +YA+ vGF+vrk ++k    +g+ + r+f C keg+++ ++k+   ++++ r +++ r+gC+a++++++ + ++ wev  ++++H H+l+
  Zosma150g00090.1 200 YFDYASCVGFNVRKGSTKIV--DGKLVLRRFLCCKEGYPNIHSKTsstRKRKIRATTVVRCGCEAMIRISRVDdTEMWEVGLFVEKHDHDLT 289
                       889************98887..999*************999888865556666688999************9999***************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd024293.69E-6425138No hitNo description
SuperFamilySSF1024629.94E-2926138IPR023476Peptidyl-tRNA hydrolase II domain
Gene3DG3DSA:3.40.1490.108.0E-726138IPR023476Peptidyl-tRNA hydrolase II domain
PfamPF019811.9E-2027137IPR002833Peptidyl-tRNA hydrolase, PTH2
PfamPF031012.3E-16200289IPR004330FAR1 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0004045Molecular Functionaminoacyl-tRNA hydrolase activity
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MTTTATENDS VEPLQKQEVS DSDPIIQYVV LRRDLIDKWP LGSIITQGCH ASVAAIWTHR  60
DHIDTAKYCS PADLDSMHKV TLEVKGEQQM RNLSEKLTAG GIEHKLWIEQ PENIPTCIAT  120
RPYQKSQIAS FFKKLKLCNS SFEQCQSNRA LVLSSPVGHV EVQPSTQLSS TGQDTPSCTN  180
HYIPCVGERF KSYENARKSY FDYASCVGFN VRKGSTKIVD GKLVLRRFLC CKEGYPNIHS  240
KTSSTRKRKI RATTVVRCGC EAMIRISRVD DTEMWEVGLF VEKHDHDLTT PLKKRNIP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9PYC00.0A0A0K9PYC0_ZOSMR; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.14e-14FAR1-related sequence 5