PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma151g00250.1
Common NameZOSMA_151G00250
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family FAR1
Protein Properties Length: 133aa    MW: 14931.3 Da    PI: 10.6929
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma151g00250.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR155.32.2e-17698390
              FAR1  3 YneYAkevGFsvrkskskks....krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90
                      Y ++A+  GFsvr  ++k+     + ++  +++++ Csk+g+++   + ++ +rr++ ++r+gC a++k k+ + ++kw+ ++++++HnH+++
  Zosma151g00250.1  6 YYDFASGKGFSVRLGSTKNIldkeSGQKILVMKRLLCSKQGSPSLILSPSDGTRRKNGVSRCGCMANIKFKRIDrSDKWVTNTVNHDHNHPFT 98
                      999**********9998776664355666789*************999999**********************99***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.0E-14698IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 133 aa     Download sequence    Send to blast
MALQSYYDFA SGKGFSVRLG STKNILDKES GQKILVMKRL LCSKQGSPSL ILSPSDGTRR  60
KNGVSRCGCM ANIKFKRIDR SDKWVTNTVN HDHNHPFTTL SKIRYLPINR SIYETFKVLF  120
SFLAEVNVPV SK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9PVZ13e-93A0A0K9PVZ1_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1424494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10240.12e-10FAR1-related sequence 11