PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma151g00300.1
Common NameZOSMA_151G00300
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family FAR1
Protein Properties Length: 383aa    MW: 43171.2 Da    PI: 9.9718
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma151g00300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR155.12.5e-1776165390
              FAR1   3 YneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                       Y  YA ++GF+vr+ ++k +  ++ ++ r+  Csk+g++ ++ ++   +ek++r+  ++r  C  ++ +++++ ++ w+v ++ ++HnH+l+
  Zosma151g00300.1  76 YMGYAGNIGFNVRIGSTKIN--DQVMVGRRILCSKQGYALTTATDnivNEKKHRRIRNSRSRCLSMIYISLNQsSNLWRVVNFIQDHNHPLV 165
                       999************98887..9999*************9999888988888889999***************99***************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.2E-1476165IPR004330FAR1 DNA binding domain
PROSITE profilePS509669.644186224IPR007527Zinc finger, SWIM-type
PfamPF044349.0E-5196217IPR007527Zinc finger, SWIM-type
SMARTSM005750.0057199226IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MHPNPCSRQP TSKSLSLHKD NKHNSLLILQ KRLSQIGDYC QIQSNPNTET IGSSTTPYFP  60
EVGQLFSTHD EARDAYMGYA GNIGFNVRIG STKINDQVMV GRRILCSKQG YALTTATDNI  120
VNEKKHRRIR NSRSRCLSMI YISLNQSSNL WRVVNFIQDH NHPLVTPSKK RYLPIFDAVS  180
IGSFEVSGTI HVGEEGVFAK CTCRLFESFE IPCRHLICYL TLNNISVLPE TLVCNRWRAI  240
QEKRPSSTSH TSKVEDMGNL RPLFNHLISL AGENEDKIIY ARKLLEDGIQ TNTVNSSARD  300
IPKIYGSITR FHYSNTQSID IGNPVVARTK GCGHGGRPPK KSKRFISRRE SNVLKQKSCS  360
IYGIKGHDKR SCPSKEQIFQ QE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9PYA50.0A0A0K9PYA5_ZOSMR; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10240.14e-14FAR1-related sequence 11