PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma152g00050.1
Common NameZOSMA_152G00050
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family AP2
Protein Properties Length: 468aa    MW: 52157.7 Da    PI: 8.5679
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma152g00050.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.61.2e-16163212155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Zosma152g00050.1 163 SQYRGVTFYRRTGRWESHIWD------SgKQVYLGGFDTAHAAARAYDRAAIKFRG 212
                       78*******************......44************************997 PP
2AP239.71.2e-12255305155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       s+y+GV+ +k  grW+A+   +     +k+ +lg f+++ eAa+a+++a+ + +g
  Zosma152g00050.1 255 SKYRGVTLHK-CGRWEARMGQF--L-GKKYMYLGLFDSEIEAARAYDKAAISCNG 305
                       89********.7******5553..2.26**********99*********987665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.01E-11163222No hitNo description
SuperFamilySSF541713.33E-16163221IPR016177DNA-binding domain
PfamPF008471.5E-9163212IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-17164220IPR001471AP2/ERF domain
SMARTSM003808.4E-32164226IPR001471AP2/ERF domain
PROSITE profilePS5103218.123164220IPR001471AP2/ERF domain
CDDcd000183.36E-24255315No hitNo description
SuperFamilySSF541717.19E-16255314IPR016177DNA-binding domain
PfamPF008472.7E-8255305IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.6E-15256313IPR001471AP2/ERF domain
PROSITE profilePS5103215.185256313IPR001471AP2/ERF domain
SMARTSM003802.7E-30256319IPR001471AP2/ERF domain
PRINTSPR003679.1E-6257268IPR001471AP2/ERF domain
PRINTSPR003679.1E-6295315IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MLDLTLRSPS GSGQNTSGKT LDDSSNALSE EPYSMHKESA IAFQFDILNK EREVTVEQEL  60
QNTDTSTDRG SYASRFITRD LLPTLMNGSQ GSSTTGLSDS KLSHFAPSHT VSKPQWTGLN  120
FCPAQVVTMP DVRLFQQQRQ QPPNQNQPQQ VKKSRRGPRS KSSQYRGVTF YRRTGRWESH  180
IWDSGKQVYL GGFDTAHAAA RAYDRAAIKF RGVDADINFN ITEYDEDLNQ MRNLTKEEFV  240
HILRRQSTGF SRGSSKYRGV TLHKCGRWEA RMGQFLGKKY MYLGLFDSEI EAARAYDKAA  300
ISCNGREAVT NFEPSSYEGE NFPDFNTQSS SNINLDLSLK ISQPIPLTEE DNNSTAISFH  360
SGRFGTSDPM KAANEATSSF IFGHPQYRAS PPAKNGSHTN FFPVSEERAF SKMPETGISN  420
WASWQVHGAP LPIFTSAASS GFSSNTFVAA RPPQQHTLPC HNPHFHP*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition (Probable). Together with IDS1, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes (PubMed:22003982). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). Regulates the transition from spikelet meristem to floral meristem, spikelet meristem determinancy and the floral organ development (PubMed:17144896). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:17144896, ECO:0000269|PubMed:22003982, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000269|PubMed:20017947, ECO:0000269|PubMed:22003982, ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022146223.11e-128ethylene-responsive transcription factor RAP2-7-like isoform X1
SwissprotQ8H4431e-107AP23_ORYSJ; APETALA2-like protein 3
TrEMBLA0A0K9PY640.0A0A0K9PY64_ZOSMR; AP2-like ethylene-responsive transcription factor
STRINGXP_010253486.11e-124(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24483890
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.22e-92AP2 family protein
Publications ? help Back to Top
  1. Lee DY,An G
    Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice.
    Plant J., 2012. 69(3): p. 445-61
    [PMID:22003982]
  2. Wang L, et al.
    Coordinated regulation of vegetative and reproductive branching in rice.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(50): p. 15504-9
    [PMID:26631749]
  3. Dai Z,Wang J,Zhu M,Miao X,Shi Z
    OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice.
    Front Plant Sci, 2016. 7: p. 1891
    [PMID:28066457]