PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma153g00330.1
Common NameZOSMA_153G00330
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family C2H2
Protein Properties Length: 296aa    MW: 34114.3 Da    PI: 10.4121
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma153g00330.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.10.0006167189123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       ykC+ C+k+Fs+   L  H  +H
  Zosma153g00330.1 167 YKCKTCNKRFSSFQALGGHRTSH 189
                       9***********99998888777 PP
2zf-C2H2130.0003254276123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       +kC++Cg+ F +   L  H+r+H
  Zosma153g00330.1 254 HKCSICGTKFFSGQALGGHMRRH 276
                       79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.54E-10166189No hitNo description
PROSITE profilePS5015711.427167194IPR007087Zinc finger, C2H2
PfamPF139128.5E-11167190IPR007087Zinc finger, C2H2
SMARTSM003550.035167189IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280169189IPR007087Zinc finger, C2H2
SuperFamilySSF576675.54E-10249276No hitNo description
PROSITE profilePS501579.702254281IPR007087Zinc finger, C2H2
PfamPF139123.3E-9254278IPR007087Zinc finger, C2H2
SMARTSM003550.017254276IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280256276IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MNFHCFQFSI LRKHRVTDKF ICVIIVQFMI QLLLNISWSI SVYHNVIHPT NPMHHTQGKK  60
SSNQGHHQRR YKDHQPDSEM DPWKRNIYPS YSNGQHDMMN SILSLTEDEK IAIEGLLLLQ  120
KQPEVKFLEM RGNVQKKMIF SKNETIANNL IIAENREKVK LEDTHKYKCK TCNKRFSSFQ  180
ALGGHRTSHK NPKKTTSILN LYVDENTLNR SKFIDKGGRC NMDINIESPF SAIKPSSMSS  240
SSNYNIAIKK KKIHKCSICG TKFFSGQALG GHMRRHRKDV QTLIKNSPQS TCSSF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9PY560.0A0A0K9PY56_ZOSMR; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.11e-16C2H2 family protein