PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma158g00330.1
Common NameZOSMA_158G00330
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family C2H2
Protein Properties Length: 211aa    MW: 22932.9 Da    PI: 9.0775
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma158g00330.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.50.000456587123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      ykC+ Cgk F +   L  H  +H
  Zosma158g00330.1 65 YKCSVCGKAFGSYQALGGHKASH 87
                      9*********9999998888777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.16E-965137No hitNo description
PfamPF139125.6E-136589IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.6E-46587IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0126587IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.976592IPR007087Zinc finger, C2H2
PROSITE patternPS0002806787IPR007087Zinc finger, C2H2
PfamPF139122.5E-13114139IPR007087Zinc finger, C2H2
PROSITE profilePS501579.951115137IPR007087Zinc finger, C2H2
SMARTSM003550.075115137IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280117137IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MISVNSSSKT KKRSRRTSTT PEEDYLALCL VMLAEEGGND EKREPLTLSY PTPIRSLPLP  60
DTLSYKCSVC GKAFGSYQAL GGHKASHRKS TKVVSAIVKP DGVIDLTTEK KQRVHRCSIC  120
SKTFSSGQAL GGHKRCHYDG GSCSNNNNNS SMTSVSVSGT TSSSTHRGFD LNLPPLPEFT  180
FDGVQRWSAL VEEDEVQSPL PLKKTHLFLH *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009399109.15e-53PREDICTED: zinc finger protein 1-like
TrEMBLA0A0K9PV861e-154A0A0K9PV86_ZOSMR; Zinc-finger protein
STRINGGSMUA_Achr5P01720_0012e-52(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34123273
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04340.11e-38zinc finger of Arabidopsis thaliana 6