PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma15g00060.1
Common NameZOSMA_15G00060
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family B3
Protein Properties Length: 367aa    MW: 40882.4 Da    PI: 8.1258
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma15g00060.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B397.96.5e-3183183195
                      EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.S CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.s 88 
                      f+kv tpsdv+k++rlv+pk++ae++    ++k+e++  l +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F +  g+  
  Zosma15g00060.1  83 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSSKNEKGLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAGDTVSFGRGvGEaV 176
                      89***************************977778999************************************************95435555 PP

                      EE..EEE CS
               B3  89 efelvvk 95 
                      + +l++ 
  Zosma15g00060.1 177 RDRLFID 183
                      5555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.7E-4275191IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.44E-2978171IPR015300DNA-binding pseudobarrel domain
CDDcd100175.02E-2781168No hitNo description
PROSITE profilePS5086313.80383185IPR003340B3 DNA binding domain
SMARTSM010194.7E-2183188IPR003340B3 DNA binding domain
PfamPF023625.4E-2883187IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009908Biological Processflower development
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MAFAYYSEGK DDEDNSSRRR LSSFTHTSHT PALSHLLPPS SSSTCSSSPT AISRNVSQAD  60
ANDDQPGSSS GADPQPIPKE HMFDKVVTPS DVGKLNRLVI PKQHAEKYFP LDSSKNEKGL  120
LLNFEDRNGK PWRFRYSYWN SSQSYVMTKG WSRFVKEKRL DAGDTVSFGR GVGEAVRDRL  180
FIDWKRKPEI PNRPDFSHLP MQNPYIPMMS FAHSVMPWNH SHTQPIPPYN VYMRSPQPYS  240
HYSHPQHSRL GVQMQYSDND TNAADNGGGD TYAARRSAVL DFDSVPVGHS SLSSTNSKHV  300
RLFGVNLDCS PSSSYIDPCA PLTTSQVRPL LSPPLSLQLG LSNSTADVVD QSPRKDKQPM  360
SLDFDI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A4e-63791904116B3 domain-containing transcription factor NGA1
5os9_B4e-63791904116B3 domain-containing transcription factor NGA1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011039561.12e-82PREDICTED: B3 domain-containing transcription factor NGA1-like isoform X2
SwissprotQ8LMR95e-77Y3209_ORYSJ; B3 domain-containing protein Os03g0120900
TrEMBLA0A0K9PWV30.0A0A0K9PWV3_ZOSMR; Auxin response factor 24
STRINGPOPTR_0002s18260.14e-80(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58337168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.15e-72B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]