PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma15g00360.1
Common NameZOSMA_15G00360
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family LBD
Protein Properties Length: 322aa    MW: 34699 Da    PI: 6.6032
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma15g00360.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26098.75.7e-314107199
           DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                      +C++C+vlr++C+++C ++p++     p++q++++ +++k++G++ +++l++a pe+ r+++++sl+yeA+ r+ +P+yG+vg+++++++q++q
  Zosma15g00360.1   4 SCNGCRVLRKGCSENCSIRPCLqwiknPDSQANATVFLAKFYGRAGLMNLINAGPENLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQMCQ 97 
                      6********************************************************************************************* PP

           DUF260  90 lkaelallke 99 
                      +++e++l ++
  Zosma15g00360.1  98 TAVEAVLKGT 107
                      ***9988765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381552.3E-901298IPR017414LOB domain-containing protein 10/36/41
PROSITE profilePS5089116.8423109IPR004883Lateral organ boundaries, LOB
PfamPF031959.8E-254102IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSENCS IRPCLQWIKN PDSQANATVF LAKFYGRAGL MNLINAGPEN  60
LRPAIFRSLL YEACGRIVNP IYGSVGLLWS GSWQMCQTAV EAVLKGTPIV QISSETAADT  120
PSPPLKAYDI RHVFKEENIS STPGSGGASS GSDHLHKVAT KSTRTRFKRP GNGNTKLKLS  180
RPAGSAAGSE AEPIDADVES RWRLSCPVDC QRTPTSHESS GSHDSSAPVT ACRENESVFS  240
EETAENASML TAEQEKHDSC ECDLELDLKL GLEPMSQHSR SNSMNGAPPP PPPKRCEKSI  300
DGWDSSTDLC RVDLALDLIT S*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010921543.11e-106LOB domain-containing protein 41
SwissprotQ9M8861e-82LBD41_ARATH; LOB domain-containing protein 41
TrEMBLA0A0K9PUI80.0A0A0K9PUI8_ZOSMR; LOB domain-containing protein
STRINGXP_008799243.11e-105(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123537127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.13e-81LOB domain-containing protein 41