PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma15g01220.1
Common NameZOSMA_15G01220
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family bHLH
Protein Properties Length: 193aa    MW: 22047.3 Da    PI: 6.2743
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma15g01220.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.89.3e-1474121355
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      + hn+rEr RR riN+++  +++l+P +      K +Ka++L  ++eY+k+Lq
  Zosma15g01220.1  74 QVHNQRERERRGRINQKMKAIQDLIPGC-----HKKDKASMLDDVTEYVKYLQ 121
                      57*************************9.....699****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.26271120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-1674141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-1174121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.2E-1675129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.85E-1276125No hitNo description
SMARTSM003532.4E-1277126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MDCTGDVRGS NMAGLFIGED KMVSWLNYDP AAESSRRLDF INTQPPVLIA EEKARCDDGY  60
DNRRTTESRL KAAQVHNQRE RERRGRINQK MKAIQDLIPG CHKKDKASML DDVTEYVKYL  120
QFLIKMMTMV EGWPMPLMMY NNEQLLVPAI EKAFSNKVDI MAGATAFMQQ IAPDKMLDGQ  180
QNWQSDYSGH FI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022561126.12e-21LOW QUALITY PROTEIN: transcription factor PIF1
TrEMBLA0A0K9PUS01e-143A0A0K9PUS0_ZOSMR; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.11e-21phytochrome interacting factor 3-like 5