PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma15g01420.1
Common NameZOSMA_15G01420
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family HSF
Protein Properties Length: 59aa    MW: 6654.49 Da    PI: 5.544
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma15g01420.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind24.76.2e-08143950
                     HHCTGGGTTTSEES.SSSSEEEES-HHHHHHHTHHHHSTT--H CS
     HSF_DNA-bind  9 iledeelkelisws.engnsfvvldeeefakkvLpkyFkhsnf 50
                     +++d  +++++sws  + nsf+v+ + ef + +L k+F+h+++
  Zosma15g01420.1  1 MIDDVLTDDTVSWSpGSDNSFIVWSPVEFCSVLLFKHFRHNSL 43
                     67788899******8677**********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.4E-7143IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467859.39E-5143IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.4E-5243IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 59 aa     Download sequence    Send to blast
MIDDVLTDDT VSWSPGSDNS FIVWSPVEFC SVLLFKHFRH NSLRTSDNSI LTKVDPKR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9PUU08e-34A0A0K9PUU0_ZOSMR; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16820.23e-13heat shock factor 3