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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | Zosma160g00330.1 | ||||||||
| Common Name | ZOSMA_160G00330 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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| Family | B3 | ||||||||
| Protein Properties | Length: 814aa MW: 94778.2 Da PI: 10.2692 | ||||||||
| Description | B3 family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | B3 | 37.3 | 4.8e-12 | 11 | 92 | 4 | 87 |
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS...-EEEEEE...EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesg...rsWevkliy.rkksgr.yvltkGWkeFvkangLkegDfvvFkldgr 87
vl d++++ l+lp k + +gg k e +++l + g ++W v ++ +k sg y+ ++GW++Fvk+++L+ g f+vF ++ +
Zosma160g00330.1 11 VL--LDNFTEE-LRLPIKVT--IGGRKWE--KMKLVSALGgekKVWYVDVKKdDKDSGVlYLTGDGWSSFVKDHDLRFGYFLVFNYSAQ 92
44..4555554.66666654..5666655..455555444456*******88445554477778*********************9764 PP
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| 2 | B3 | 53.7 | 3.8e-17 | 180 | 273 | 1 | 92 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE......EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy....rkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89
f+ ++t s+v + +vlp +f +++++++ + + +l++++grsW+vk+++ ++k++ +++ GW+ F ++n+LkegD+ vF+l ++s+
Zosma160g00330.1 180 FKITMTYSYVRRATGMVLPARFRDANNLSSVN--EAILTTTNGRSWTVKICHrrirDGKKKNSYFSVGWSIFLRENNLKEGDVYVFELLSKSR 270
67789999******************888555..8***************99777766666689999********************987666 PP
E.. CS
B3 90 fel 92
+
Zosma160g00330.1 271 DRV 273
544 PP
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| 3 | B3 | 31.6 | 2.9e-10 | 317 | 412 | 3 | 99 |
EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
B3 3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsefelv 93
++++ ++ +++++ +p f ++++ ++ + + +l+ ++g sW++k +y++ +++ +l+ G + F ++n+LkegD+ vF + + +f+
Zosma160g00330.1 317 EITMTDSYIRRSLMHFPAGFGDANNFSTVN--EAILTATNGCSWTLKNCYSRIGNKinNYLSVGRSVFLRENNLKEGDVYVFDRAN-FSFTKQ 406
4566888888899***********777555..79****************6666666699**********************9543.677777 PP
EEEE-S CS
B3 94 vkvfrk 99
+ +frk
Zosma160g00330.1 407 LEFFRK 412
777766 PP
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| 4 | B3 | 43.9 | 4.3e-14 | 446 | 541 | 2 | 96 |
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkldgrsefe 91
f ++++ ++ ++ ++ +p +f +++++++ + + +l+ ++gr+W vk+ +r+ ++ +++GW Fv++n+LkegD+ vF+l++r+e +
Zosma160g00330.1 446 FEITMTGSYIQRPIMHFPAEFRNANNLSSVN--EAILTATNGRRWMVKIHHRRLANKiiiSSFSAGWPVFVRENNLKEGDVYVFELSSRNENQ 536
5566677777778899*****9999888555..79**************999999995555666**********************9987776 PP
.EEEE CS
B3 92 lvvkv 96
v++v
Zosma160g00330.1 537 AVFSV 541
77766 PP
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| 5 | B3 | 40.2 | 6.1e-13 | 585 | 674 | 6 | 96 |
..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
B3 6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95
++s + k+ ++ +p f ++++++ + ++tl + +g W+vkl++ k+++ ++++GW Fv++n+LkegD+ vF+l++r+e + v++
Zosma160g00330.1 585 MTSTYIKR-LMHFPVAFRNKNNLSAVN--EVTLVNANG-CWKVKLCHIPKGNQiltSFFSAGWPVFVRENNLKEGDVYVFELSSRNENQAVFS 673
45666665.5999****9999888666..799999777.5*****998888887778899**********************99877767776 PP
E CS
B3 96 v 96
v
Zosma160g00330.1 674 V 674
6 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SMART | SM01019 | 1.4E-5 | 8 | 103 | IPR003340 | B3 DNA binding domain |
| CDD | cd10017 | 2.82E-7 | 8 | 90 | No hit | No description |
| SuperFamily | SSF101936 | 1.12E-11 | 8 | 109 | IPR015300 | DNA-binding pseudobarrel domain |
| Pfam | PF02362 | 3.3E-9 | 11 | 91 | IPR003340 | B3 DNA binding domain |
| Gene3D | G3DSA:2.40.330.10 | 1.2E-10 | 12 | 100 | IPR015300 | DNA-binding pseudobarrel domain |
| PROSITE profile | PS50863 | 8.98 | 47 | 103 | IPR003340 | B3 DNA binding domain |
| SuperFamily | SSF101936 | 9.61E-18 | 177 | 273 | IPR015300 | DNA-binding pseudobarrel domain |
| Gene3D | G3DSA:2.40.330.10 | 9.7E-18 | 177 | 274 | IPR015300 | DNA-binding pseudobarrel domain |
| CDD | cd10017 | 6.06E-14 | 178 | 265 | No hit | No description |
| Pfam | PF02362 | 3.1E-14 | 180 | 271 | IPR003340 | B3 DNA binding domain |
| SMART | SM01019 | 2.0E-13 | 180 | 279 | IPR003340 | B3 DNA binding domain |
| PROSITE profile | PS50863 | 13.972 | 180 | 281 | IPR003340 | B3 DNA binding domain |
| Gene3D | G3DSA:2.40.330.10 | 2.6E-10 | 312 | 400 | IPR015300 | DNA-binding pseudobarrel domain |
| SuperFamily | SSF101936 | 3.79E-10 | 313 | 409 | IPR015300 | DNA-binding pseudobarrel domain |
| CDD | cd10017 | 1.11E-7 | 314 | 404 | No hit | No description |
| PROSITE profile | PS50863 | 9.347 | 315 | 413 | IPR003340 | B3 DNA binding domain |
| SMART | SM01019 | 0.0085 | 316 | 413 | IPR003340 | B3 DNA binding domain |
| Pfam | PF02362 | 3.3E-8 | 317 | 412 | IPR003340 | B3 DNA binding domain |
| SuperFamily | SSF101936 | 1.61E-14 | 442 | 533 | IPR015300 | DNA-binding pseudobarrel domain |
| Gene3D | G3DSA:2.40.330.10 | 8.4E-16 | 442 | 541 | IPR015300 | DNA-binding pseudobarrel domain |
| PROSITE profile | PS50863 | 12.633 | 445 | 545 | IPR003340 | B3 DNA binding domain |
| SMART | SM01019 | 9.4E-5 | 446 | 545 | IPR003340 | B3 DNA binding domain |
| CDD | cd10017 | 4.15E-10 | 446 | 533 | No hit | No description |
| Pfam | PF02362 | 2.8E-11 | 447 | 541 | IPR003340 | B3 DNA binding domain |
| Gene3D | G3DSA:2.40.330.10 | 4.8E-15 | 577 | 674 | IPR015300 | DNA-binding pseudobarrel domain |
| SuperFamily | SSF101936 | 9.02E-13 | 577 | 665 | IPR015300 | DNA-binding pseudobarrel domain |
| PROSITE profile | PS50863 | 11.011 | 579 | 678 | IPR003340 | B3 DNA binding domain |
| CDD | cd10017 | 4.50E-11 | 579 | 666 | No hit | No description |
| SMART | SM01019 | 2.0E-10 | 581 | 678 | IPR003340 | B3 DNA binding domain |
| Pfam | PF02362 | 8.2E-11 | 584 | 674 | IPR003340 | B3 DNA binding domain |
| SuperFamily | SSF101936 | 3.92E-7 | 711 | 796 | IPR015300 | DNA-binding pseudobarrel domain |
| Gene3D | G3DSA:2.40.330.10 | 2.9E-8 | 711 | 800 | IPR015300 | DNA-binding pseudobarrel domain |
| PROSITE profile | PS50863 | 6.16 | 712 | 810 | IPR003340 | B3 DNA binding domain |
| SMART | SM01019 | 0.0037 | 714 | 808 | IPR003340 | B3 DNA binding domain |
| Pfam | PF02362 | 6.2E-8 | 715 | 802 | IPR003340 | B3 DNA binding domain |
| CDD | cd10017 | 5.02E-8 | 721 | 807 | No hit | No description |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0005634 | Cellular Component | nucleus | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 814 aa Download sequence Send to blast |
MVDFTGNFFR VLLDNFTEEL RLPIKVTIGG RKWEKMKLVS ALGGEKKVWY VDVKKDDKDS 60 GVLYLTGDGW SSFVKDHDLR FGYFLVFNYS AQMNYKVIPY DLSTFEKPYQ QSVHDDTHQC 120 LKRKWKSSQE ATDDNRLKKK KKAVIFPPRF PANSEKNEEE NNIEKMKNVG GNFGVSKPRF 180 KITMTYSYVR RATGMVLPAR FRDANNLSSV NEAILTTTNG RSWTVKICHR RIRDGKKKNS 240 YFSVGWSIFL RENNLKEGDV YVFELLSKSR DRVDFSVTKK LEFSRKTVPG RTQSPRMTND 300 GNRAYFDVKM VEKPQFEITM TDSYIRRSLM HFPAGFGDAN NFSTVNEAIL TATNGCSWTL 360 KNCYSRIGNK INNYLSVGRS VFLRENNLKE GDVYVFDRAN FSFTKQLEFF RKTAPRRTYS 420 PRMTNGFSMD GNESYFDVKM ADKPWFEITM TGSYIQRPIM HFPAEFRNAN NLSSVNEAIL 480 TATNGRRWMV KIHHRRLANK IIISSFSAGW PVFVRENNLK EGDVYVFELS SRNENQAVFS 540 VTKQLEFSRK VVPRRMHSPR MTNSRGFSTD ENRAMVEKPQ FEIKMTSTYI KRLMHFPVAF 600 RNKNNLSAVN EVTLVNANGC WKVKLCHIPK GNQILTSFFS AGWPVFVREN NLKEGDVYVF 660 ELSSRNENQA VFSVTKQLEF FRKAVPRRMH SPRMTNRRRF STDENRAMVE KPQFKISIAP 720 YIHMNFMYFP SRFCDANNLS SIDQAILTYN NVNWPVKICH TPQRDRYIFS TLSTGWISFV 780 RENNLEVDIY NFELSSTDET RAYFIVTKEV DLC* |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 121 | 141 | KRKWKSSQEATDDNRLKKKKK |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| TrEMBL | A0A0K9PWQ8 | 0.0 | A0A0K9PWQ8_ZOSMR; Uncharacterized protein | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT2G24680.1 | 6e-13 | B3 family protein | ||||
| Link Out ? help Back to Top | |
|---|---|
| Phytozome | Zosma160g00330.1 |




