PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma160g00350.1

Common Name

ZOSMA_160G00350

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

Dof

Protein Properties

Length: 215aa MW: 23025.5 Da PI: 8.4888

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma160g00350.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	114.4	4.9e-36	79	131	6	58
zf-Dof 6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrkn 58 l cprC+s++tkfCy+nny+++qPr+fC++C+ryWt+GGa+rnvP+G+grrk Zosma160g00350.1 79 LVCPRCKSRETKFCYFNNYNVNQPRHFCRGCHRYWTAGGAIRNVPIGAGRRKA 131 68*************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-23	79	130	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	27.363	79	133	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	4.2E-30	79	131	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	81	117	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 215 aa Download sequence Send to blast
MVDSNGFEEE RNTNLTLSND SSCFKLFGKR IVTAADQTLS TTSDTSPETE RNPFDSSERL 60 SVATEPAVPV EVVTVAIGLV CPRCKSRETK FCYFNNYNVN QPRHFCRGCH RYWTAGGAIR 120 NVPIGAGRRK AVGSNTGAGG GNSSCSSSSN GSGAKSGGGF GYSHDHDEVG MEQYWLRQAA 180 APPPESNESV VGFLPVKRGN DIGGFHGRIR RPKV*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Transcriptional repressor of 'CONSTANS' expression (By similarity). Regulates a photoperiodic flowering response. {ECO:0000250, ECO:0000269\|PubMed:19619493}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation. The transcript level rises progressively from dawn and decreases during the night. {ECO:0000269\|PubMed:19619493}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006295511.1	3e-34	cyclic dof factor 4
Refseq	XP_020694660.1	2e-34	cyclic dof factor 4-like
Swissprot	O22967	7e-34	CDF4_ARATH; Cyclic dof factor 4
TrEMBL	A0A0K9PUQ4	1e-157	A0A0K9PUQ4_ZOSMR; Uncharacterized protein
STRING	XP_006295511.1	1e-33	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6495	28	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34140.1	9e-34	Dof family protein

Link Out ? help Back to Top
Phytozome	Zosma160g00350.1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Bueso E, et al. Arabidopsis COGWHEEL1 links light perception and gibberellins with seed tolerance to deterioration. Plant J., 2016. 87(6): p. 583-96 [PMID:27227784]