PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma161g00060.1
Common NameZOSMA_161G00060
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family ERF
Protein Properties Length: 170aa    MW: 18861.3 Da    PI: 5.8412
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma161g00060.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.65.6e-171161256
               AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                      gy+G+r +k +g+Wv+eIr+p   gk+++++lg+f ++e+Aa a++ a+++l+g+
  Zosma161g00060.1 11 GYHGIRKRK-WGKWVSEIREP---GKKTKIWLGSFESPEKAAVAYDVAALSLKGH 61
                      8*****999.**********8...657*************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.9E-101161IPR001471AP2/ERF domain
SMARTSM003801.2E-281176IPR001471AP2/ERF domain
SuperFamilySSF541716.08E-211170IPR016177DNA-binding domain
PROSITE profilePS5103221.5091168IPR001471AP2/ERF domain
CDDcd000186.01E-261270No hitNo description
PRINTSPR003671.6E-111223IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-281270IPR001471AP2/ERF domain
PRINTSPR003671.6E-115070IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MAPSSVTVKQ GYHGIRKRKW GKWVSEIREP GKKTKIWLGS FESPEKAAVA YDVAALSLKG  60
HQAWLNFPDS VDLYPRPVSS SSADIRSAAV EAARNVVQLR RRKTDELNEL ISSTAAVREM  120
SSDVENGDWP KMWAELAEAM LLSPPRISEI AELDDLPDVS LWDSSFSNF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-161272667ATERF1
3gcc_A1e-161272667ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00227DAPTransfer from AT1G71450Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010930490.18e-49ethylene-responsive transcription factor ERF038
SwissprotQ9C9I21e-31ERF21_ARATH; Ethylene-responsive transcription factor ERF021
TrEMBLA0A0K9PU381e-118A0A0K9PU38_ZOSMR; Dehydration responsive element binding transcription factor 1B
STRINGXP_008795312.15e-45(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22443389
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71450.16e-34ERF family protein