PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma161g00190.1
Common NameZOSMA_161G00190
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family ZF-HD
Protein Properties Length: 260aa    MW: 30060.7 Da    PI: 7.9516
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma161g00190.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer102.43.1e-3259113358
       ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 
                       +v+YkeClkNhAas+Gg+a+DGCgEfmps g+egt ++lkC+AC+CHRnFHR+e+e
  Zosma161g00190.1  59 GVKYKECLKNHAASIGGNATDGCGEFMPS-GKEGTLEGLKCSACNCHRNFHRKEME 113
                       689*************************9.999********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257745.0E-2360114IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047703.9E-2960112IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.7E-3061112IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.5462111IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.607.4E-30174246IPR009057Homeodomain-like
SuperFamilySSF466892.69E-18177246IPR009057Homeodomain-like
TIGRFAMsTIGR015651.8E-26187243IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048574Biological Processlong-day photoperiodism, flowering
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MDLFSHEGEI PMEVSRKYEE MSNGLQNPTT TNTDTTDDQD QQQHISIDSN KKRVVVAVGV  60
KYKECLKNHA ASIGGNATDG CGEFMPSGKE GTLEGLKCSA CNCHRNFHRK EMEGGDHHHH  120
HHLYNNNPHH SYLPHQYFKE MNNNNNNRLG TSSTSLIPHN MIMPLGAMQT SESDEMEMGY  180
SRPPMMKKRF RTKFNPEQKE KMLRFAERVG WRLQKQEESV VQQFCQEIGV RRRVLKVWMH  240
NNKHNYMTKK DSNIQLDDQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A4e-241882451875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Probably involved in the regulation of floral induction. {ECO:0000269|PubMed:22319055}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by exposure to long days. {ECO:0000269|PubMed:22319055}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010912718.13e-91zinc-finger homeodomain protein 4
RefseqXP_010912720.13e-91zinc-finger homeodomain protein 4
RefseqXP_029118422.13e-91zinc-finger homeodomain protein 4
SwissprotQ9M9S08e-69ZHD4_ARATH; Zinc-finger homeodomain protein 4
TrEMBLA0A0K9PWF10.0A0A0K9PWF1_ZOSMR; Zinc finger-homeodomain protein 1
STRINGXP_008808961.19e-90(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81535145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14440.22e-69homeobox protein 31