PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma161g00390.1

Common Name

ZOSMA_161G00390

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

FAR1

Protein Properties

Length: 166aa MW: 19197.1 Da PI: 9.5794

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma161g00390.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	61.9	1.8e-19	50	141	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 Y +YA + GFsvrk ++++sk+ k+t+vCskeg ++ k ++ + r+ + rt+Cka + +k e ++w+++ ++ HnHe Zosma161g00390.1 50 LYYKYAGHKGFSVRKGSTRHSKK--GLRKKTYVCSKEGISRAIVPKmqnpleKSGRLRQIRNPRTNCKALMSLKIE-GDEWMISVFKDIHNHE 139 79****************944..37*******9987666666787556666788899********9.9************* PP FAR1 89 la 90 ++ Zosma161g00390.1 140 MS 141 97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.6E-17	50	141	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 166 aa Download sequence Send to blast
MKLFATYIDY CDATTEMCGE EEDNMQTPSR ECEEPKVGMK FTTIGEVEEL YYKYAGHKGF 60 SVRKGSTRHS KKGLRKKTYV CSKEGISRAI VPKMQNPLEK SGRLRQIRNP RTNCKALMSL 120 KIEGDEWMIS VFKDIHNHEM STPSLKRFLK INREITNTIR KEFDT*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0K9PWH4	1e-120	A0A0K9PWH4_ZOSMR; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28530.1	3e-12	FAR1-related sequence 10

Link Out ? help Back to Top
Phytozome	Zosma161g00390.1