PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma161g00580.1
Common NameZOSMA_161G00580
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family MYB
Protein Properties Length: 192aa    MW: 22212.4 Da    PI: 11.0916
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma161g00580.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding574.5e-181459147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                      rg W + Ede+l ++v+q+G+ +W++Ia++++ gR++k+c++rw++ 
  Zosma161g00580.1 14 RGHWRPREDEKLRQLVAQYGPQSWNSIAEKLQ-GRSGKSCRLRWFNQ 59
                      899*****************************.***********996 PP
2Myb_DNA-binding55.11.8e-1766108145
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                       ++++T+eE+e+l++ +  +G++ W++Iar ++ gRt++ +k++w+
  Zosma161g00580.1  66 KKPFTEEEEEKLLKSHSVHGNR-WALIARLFP-GRTDNAVKNHWH 108
                       689*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.967960IPR017930Myb domain
SuperFamilySSF466891.27E-2913107IPR009057Homeodomain-like
SMARTSM007172.7E-141362IPR001005SANT/Myb domain
PfamPF002491.9E-171459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-271567IPR009057Homeodomain-like
CDDcd001671.67E-131758No hitNo description
PROSITE profilePS5129424.87261115IPR017930Myb domain
SMARTSM007172.0E-1565113IPR001005SANT/Myb domain
PfamPF002495.0E-1566108IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.6E-2268114IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MEDSGATPAR MCPRGHWRPR EDEKLRQLVA QYGPQSWNSI AEKLQGRSGK SCRLRWFNQL  60
DPRINKKPFT EEEEEKLLKS HSVHGNRWAL IARLFPGRTD NAVKNHWHVI TARKQRQRAR  120
SFDPRLKFNY GYKPMPKSSS SRLSWAVSSI LINRKPLLSP KSTPFRRSFP DKDDTKEVPY  180
IDFLGVGLPS T*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-33141147107B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that confers sensitivity to abscisic acid (ABA) and salt, but tolerance to drought (PubMed:21399993). Regulates secondary cell wall (SCW) biosynthesis, especially in interfascicular and xylary fibers (PubMed:18952777, PubMed:23781226). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:21399993, ECO:0000269|PubMed:23781226}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (PubMed:16463103, PubMed:21399993). Accumulates in response to salt (PubMed:21399993). Triggered by MYB46 and MYB83 in the regulation of secondary cell wall biosynthesis (PubMed:19674407, PubMed:22197883). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19674407, ECO:0000269|PubMed:21399993, ECO:0000269|PubMed:22197883}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020252127.16e-71transcription factor MYB52-like
SwissprotQ6R0C42e-62MYB52_ARATH; Transcription factor MYB52
TrEMBLA0A0K9PWN41e-139A0A0K9PWN4_ZOSMR; Uncharacterized protein
STRINGXP_006473036.12e-66(Citrus sinensis)
STRINGXP_006434346.12e-66(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29438260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17950.13e-58myb domain protein 52
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Cassan-Wang H, et al.
    Identification of novel transcription factors regulating secondary cell wall formation in Arabidopsis.
    Front Plant Sci, 2013. 4: p. 189
    [PMID:23781226]
  3. Shi D, et al.
    MYB52 Negatively Regulates Pectin Demethylesterification in Seed Coat Mucilage.
    Plant Physiol., 2018. 176(4): p. 2737-2749
    [PMID:29440562]