PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma162g00080.1
Common NameZOSMA_162G00080
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family LBD
Protein Properties Length: 216aa    MW: 23623.5 Da    PI: 7.7202
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma162g00080.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260958.4e-304107199
            DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 
                       +C++C+vlr++C+ +C ++p++       +q++++++++k++G+sn +++++a+p+++r+++++sl+yeA  r+ +P+yG+vg++++++++++
  Zosma162g00080.1   4 SCNGCRVLRKACNVNCSIRPCLqwiqdSRSQANATQFLAKFYGRSNFINFIDATPHDQRPAIFRSLLYEASGRIVNPIYGSVGLLSSGNWRIC 96 
                       6*********************9988777889************************************************************* PP

            DUF260  89 qlkaelallke 99 
                       q++++++l +e
  Zosma162g00080.1  97 QMAVDAVLKGE 107
                       ***99988765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089117.3993109IPR004883Lateral organ boundaries, LOB
PfamPF031952.0E-244102IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MKKSCNGCRV LRKACNVNCS IRPCLQWIQD SRSQANATQF LAKFYGRSNF INFIDATPHD  60
QRPAIFRSLL YEASGRIVNP IYGSVGLLSS GNWRICQMAV DAVLKGEDIT NSNFDAQISM  120
PPPPTTTTTP GYSCAYDIRH VHTNKSIGSM NQKQNEFHGF ADNEKIELDL TLGLDPIAHA  180
GSCTGNSFSA GTTSSSENYR NFPPLAETSD GWTTI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027359243.17e-59LOB domain-containing protein 41-like
SwissprotQ9ZW967e-57LBD40_ARATH; LOB domain-containing protein 40
TrEMBLA0A0K9PU561e-161A0A0K9PU56_ZOSMR; LOB domain-containing protein 40
STRINGGSMUA_Achr4P13790_0013e-61(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123537127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67100.15e-57LOB domain-containing protein 40