PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma162g00190.1
Common NameZOSMA_162G00190
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family GATA
Protein Properties Length: 295aa    MW: 32135 Da    PI: 9.3898
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma162g00190.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA35.11.8e-11182207128
              GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGl 28 
                       Cs+C++  Tp+WR  p g+ktLCnaCG+
  Zosma162g00190.1 182 CSHCRAVVTPQWR--PMGPKTLCNACGV 207
                       *************..***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004010.0017176219IPR000679Zinc finger, GATA-type
PROSITE profilePS501149.394176207IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.9E-7177217No hitNo description
Gene3DG3DSA:3.30.50.108.9E-8180207IPR013088Zinc finger, NHR/GATA-type
PfamPF003206.3E-8182207IPR000679Zinc finger, GATA-type
CDDcd002028.17E-7182206No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MMKSADYYSG KASADDGKQI SLLPNPSSIP AHQSISNQQR LIDDDKDRDK DNCIVVENGP  60
PLPPPALPSV SPSSSSSSSM NTGSKAPIII SNSSGIFTTL TNRGRAPRTK RRKFIPKHPL  120
NKRPVDFPIP ALECDITEER QSKKLKTVHP SSTSVEINLP PTPSSQPHLV PCQKDEETIR  180
NCSHCRAVVT PQWRPMGPKT LCNACGVPPN PSRVPRNRNR GSAELDRGSA ELDRGSAELD  240
RGSAELDFDS AEPIANLRGT SARRTEQRPS GWRGTSDFDS MNGREFFGKM DGRI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9PU670.0A0A0K9PU67_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51693451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08010.23e-10GATA transcription factor 11