PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma162g00710.1
Common NameZOSMA_162G00710
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family MYB_related
Protein Properties Length: 223aa    MW: 24681.1 Da    PI: 4.9459
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma162g00710.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.61.2e-12137181347
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       +W+++E+ l++ +  ++G+g+W++I+r +   Rt+ q+ s+ qky
  Zosma162g00710.1 137 AWSEDEHRLFLLGLDKYGKGDWRSISRNFVVSRTPTQVASHAQKY 181
                       6*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.1212781IPR017877Myb-like domain
SMARTSM007177.3E-43183IPR001005SANT/Myb domain
SuperFamilySSF466895.3E-93384IPR009057Homeodomain-like
CDDcd001672.24E-43477No hitNo description
PROSITE profilePS5129416.361130186IPR017930Myb domain
SuperFamilySSF466893.59E-16130187IPR009057Homeodomain-like
SMARTSM007171.2E-9134184IPR001005SANT/Myb domain
TIGRFAMsTIGR015574.5E-17134184IPR006447Myb domain, plants
CDDcd001671.04E-8137182No hitNo description
PfamPF002491.7E-10137181IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-10137180IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MREISDTLPA SPSRDLSSAV EDFGMEEATN SGSTWTWEQE KAFENALAVY AEESSNRWVC  60
VAADVDGKTE EEVRRHFEIL IEDIDGIESG RVPLPSYVSS SEGSAEDIGG NKGKKSSSNA  120
TGKKLPRTYQ ERRKGIAWSE DEHRLFLLGL DKYGKGDWRS ISRNFVVSRT PTQVASHAQK  180
YFIRLNSMNK ERRRSSIHDI TTPAGVDKDG DDVTATAATT EQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-202597173RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009418273.14e-85PREDICTED: transcription factor DIVARICATA-like
SwissprotQ9FNN65e-73SRM1_ARATH; Transcription factor SRM1
TrEMBLA0A0K9PWD01e-162A0A0K9PWD0_ZOSMR; Myb family transcription factor
STRINGXP_010279472.14e-83(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63763854
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.14e-75MYB family protein
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]