PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma166g00220.1
Common NameZOSMA_166G00220
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family B3
Protein Properties Length: 243aa    MW: 28297.7 Da    PI: 7.8919
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma166g00220.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B396.22.2e-3021109185
                       EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                       f+k ltpsdv+k++rlv+pk++ae+h      +   e++  l +ede g+sW+++++y+ +s++yvltkGW+++vk+++L++gD+v+F   
  Zosma166g00220.1  21 FEKLLTPSDVGKLNRLVIPKQHAERHfpldaeS--GEKGLLLNFEDEGGKSWRFRYSYWTSSQSYVLTKGWSRYVKEKQLDAGDVVLFDKR 109
                       99**************************99643..457789***********************************************932 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.3E-3816110IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.88E-2818107IPR015300DNA-binding pseudobarrel domain
CDDcd100171.73E-2619106No hitNo description
PROSITE profilePS5086313.46521125IPR003340B3 DNA binding domain
PfamPF023621.5E-2721108IPR003340B3 DNA binding domain
SMARTSM010195.6E-2021118IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MENAMAGEDT RWGNWEREHL FEKLLTPSDV GKLNRLVIPK QHAERHFPLD AESGEKGLLL  60
NFEDEGGKSW RFRYSYWTSS QSYVLTKGWS RYVKEKQLDA GDVVLFDKRK RRRGDRSDFD  120
GYGDGDGDRL YIGWKRREIQ IPNAEHVVMW NTTLYGVDPL LQNYQHHHHH PRRLLPPSTP  180
VAGTMRRESQ FYAIEEQRGS SIHQSTTSTW KKQLRLFGVN LECEMSSATV DDPRELQLLP  240
HS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A2e-51161373113B3 domain-containing transcription factor NGA1
5os9_B2e-51161373113B3 domain-containing transcription factor NGA1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1107112KRKRRR
2108112RKRRR
Functional Description ? help Back to Top
Source Description
UniProtRegulates lateral organ growth. Functionally redundant with NGA2, NGA3 and NGA4. {ECO:0000269|PubMed:16603651}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020246232.11e-62LOW QUALITY PROTEIN: B3 domain-containing protein Os11g0156000-like
SwissprotO827996e-55NGA1_ARATH; B3 domain-containing transcription factor NGA1
TrEMBLA0A0K9PVQ31e-180A0A0K9PVQ3_ZOSMR; B3 domain-containing transcription factor NGA1
STRINGVIT_08s0007g02810.t013e-59(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24463889
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.15e-51B3 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Lee BH, et al.
    The Arabidopsis thaliana NGATHA transcription factors negatively regulate cell proliferation of lateral organs.
    Plant Mol. Biol., 2015. 89(4-5): p. 529-38
    [PMID:26433582]
  3. Lozano-Sotomayor P, et al.
    Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana.
    Plant J., 2016. 88(3): p. 437-451
    [PMID:27402171]
  4. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]
  5. Sasnauskas G,Manakova E,Lapėnas K,Kauneckaitė K,Siksnys V
    DNA recognition by Arabidopsis transcription factors ABI3 and NGA1.
    FEBS J., 2018. 285(21): p. 4041-4059
    [PMID:30183137]
  6. Sato H, et al.
    Arabidopsis thaliana NGATHA1 transcription factor induces ABA biosynthesis by activating NCED3 gene during dehydration stress.
    Proc. Natl. Acad. Sci. U.S.A., 2018. 115(47): p. E11178-E11187
    [PMID:30397148]