PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma169g00450.1

Common Name

ZOSMA_169G00450

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

bHLH

Protein Properties

Length: 197aa MW: 22463.6 Da PI: 4.8896

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma169g00450.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.3	5.1e-12	31	77	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++ +ErrRR++++++ + Lr+l+P +K+sK ++L+ A++YI++Lq Zosma169g00450.1 31 KNINAERRRRAKLKDSHHALRSLVPII-----TKMSKEATLTDATDYIRKLQ 77 55678*******************7.....7****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	4.32E-16	18	89	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.86E-11	26	77	No hit	No description
PROSITE profile	PS50888	14.786	27	76	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.7E-14	29	90	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.2E-9	31	77	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.6E-12	33	82	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 197 aa Download sequence Send to blast
MEFPEHMFNG SGADAVGGGG NSNMVKEYKS KNINAERRRR AKLKDSHHAL RSLVPIITKM 60 SKEATLTDAT DYIRKLQEEI RRLEEELRET LPEDENEENR EEEEDEDKKM DVKGEVDVIP 120 ISRNGFYVKM VCMMSKCRGF SKVVETLGSI GGEMTNVSFN AMDGVCQIMF CLEVEENKRN 180 LKVEKDDVKF LLEKMV*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0K9PT80	1e-140	A0A0K9PT80_ZOSMR; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11982	30	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16910.1	4e-10	bHLH family protein

Link Out ? help Back to Top
Phytozome	Zosma169g00450.1