PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma16g00030.1
Common NameZOSMA_16G00030
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family WRKY
Protein Properties Length: 145aa    MW: 16276.3 Da    PI: 9.0976
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma16g00030.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1079.6e-341067259
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY  2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
                     +Dgy+WrKYGqK vk+s++prsYYrCts+ C vkk+vers++dp vv++tYeg+H+h 
  Zosma16g00030.1 10 EDGYRWRKYGQKAVKNSPYPRSYYRCTSSMCGVKKRVERSSSDPAVVVTTYEGQHTHA 67
                     8********************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.9E-33269IPR003657WRKY domain
SuperFamilySSF1182907.45E-29369IPR003657WRKY domain
PROSITE profilePS5081131.8469IPR003657WRKY domain
SMARTSM007742.6E-39968IPR003657WRKY domain
PfamPF031065.7E-271066IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    Send to blast
MTKSEIDHLE DGYRWRKYGQ KAVKNSPYPR SYYRCTSSMC GVKKRVERSS SDPAVVVTTY  60
EGQHTHASPI APRGELISPH INYSTFAASM QATQFHVPCR KFSIPSYQPS ISPPPQQMQV  120
DEISHGLVRD HGLLQDLVPS DVRN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-302691077Probable WRKY transcription factor 4
2lex_A5e-302691077Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010259241.18e-51PREDICTED: probable WRKY transcription factor 48
SwissprotQ9FGZ41e-43WRK48_ARATH; Probable WRKY transcription factor 48
TrEMBLA0A0K9PSU71e-104A0A0K9PSU7_ZOSMR; Putative WRKY transcription factor 43
STRINGXP_010259241.13e-50(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21253796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49520.15e-45WRKY DNA-binding protein 48
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]