PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma16g00960.1
Common NameZOSMA_16G00960
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family C2H2
Protein Properties Length: 374aa    MW: 41383.1 Da    PI: 8.6149
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma16g00960.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.45.3e-05628123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     + C+ C+k F r  nL+ H r H
  Zosma16g00960.1  6 FICEMCKKGFQREQNLQLHRRGH 28
                     89*******************88 PP
2zf-C2H2130.0003192113223
                      EETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                       C +C+k++  +s+ k H +t+
  Zosma16g00960.1  92 NCDKCDKRYAVQSDWKAHSKTC 113
                      6*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.31E-7528No hitNo description
Gene3DG3DSA:3.30.160.601.4E-4528IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.762628IPR007087Zinc finger, C2H2
SMARTSM003550.017628IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280828IPR007087Zinc finger, C2H2
SMARTSM003552405686IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.4E-578112IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.31E-786111No hitNo description
SMARTSM0035519091111IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MATNRFICEM CKKGFQREQN LQLHRRGHNL PWKLRQKSSS SSSSSSSKQV SKRRVYLCPE  60
PTCVHHHPSR ALGDLTGVKK HFSRKHGEKK WNCDKCDKRY AVQSDWKAHS KTCGTRDYSC  120
DCGTLFSRRD SLITHRAFCN VFPQEAATVS RVPSYHLYGS NSGTGGSDNL MPTFPSSRFL  180
FGGLNQDSFP SSLTQYRIPD LHISKNLQLD HDICNNQNDP FMFEQFSVGG NANLDPFNIG  240
SFYNNDQSAF SFPHMSATAL LQKPAEIGAT TTTPPILNNN SNGNGNGNGN SSVLGNMTGS  300
PIQYELPVGN EAHLQGLISS LVTENNAGMF GRDMQQHAAH HAGVLTRDFL GVEREPDPTN  360
FTQQIPYGAA NFQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C6e-3087152368Zinc finger protein JACKDAW
5b3h_F6e-3087152368Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may act a transcriptional activator of nuclear-encoded photosynthetic gene expression (Probable). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:24821766, ECO:0000305|PubMed:19726569}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by gibberellin. {ECO:0000305|PubMed:17933900}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020705077.17e-94protein indeterminate-domain 5, chloroplastic
RefseqXP_020705079.17e-94protein indeterminate-domain 5, chloroplastic
RefseqXP_020705080.17e-94protein indeterminate-domain 5, chloroplastic
SwissprotQ8GYC13e-84IDD4_ARATH; Protein indeterminate-domain 4, chloroplastic
TrEMBLA0A0K9PT580.0A0A0K9PT58_ZOSMR; Putative Zinc finger protein
STRINGGSMUA_Achr9P23870_0015e-90(Musa acuminata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02080.21e-86indeterminate(ID)-domain 4
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]