PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma16g01200.1
Common NameZOSMA_16G01200
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family ERF
Protein Properties Length: 216aa    MW: 24200.2 Da    PI: 8.2195
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma16g01200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.72.2e-162779255
              AP2  2 gykGVrwdkkrgrWvAeIrdpseng..krkrfslgkfgtaeeAakaaiaarkkleg 55
                     ++ GVr++  +grWvAeI+  s  +  ++ r +lg+f taeeAa+a+++a+  l+g
  Zosma16g01200.1 27 KFIGVRQRQ-SGRWVAEIKGTS--KttQKIRMWLGTFKTAEEAARAYDEAACLLRG 79
                     789***999.7******77733..34457**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.07E-242680No hitNo description
Gene3DG3DSA:3.30.730.101.3E-262788IPR001471AP2/ERF domain
SMARTSM003802.9E-322793IPR001471AP2/ERF domain
PfamPF008473.3E-122779IPR001471AP2/ERF domain
PROSITE profilePS5103219.6122787IPR001471AP2/ERF domain
SuperFamilySSF541715.17E-182788IPR016177DNA-binding domain
PRINTSPR003674.5E-72839IPR001471AP2/ERF domain
PRINTSPR003674.5E-75369IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000302Biological Processresponse to reactive oxygen species
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0035865Biological Processcellular response to potassium ion
GO:0048528Biological Processpost-embryonic root development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MFPFQNQHVS SIPQPKPTKS DPKQVAKFIG VRQRQSGRWV AEIKGTSKTT QKIRMWLGTF  60
KTAEEAARAY DEAACLLRGS NTRTNFPNTT TTPLGASDSP LASRIRSLLE RRKQKADQTQ  120
MNNNPISRTL PLSTDQTVDP IFPKELLVEP SELVEYSYPN HVPITTMVAE TSPISAMNRQ  180
DTGLDELFYG EDCSNSSGVD LHEYFPSFQH LFFNT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-1326951380Ethylene-responsive transcription factor ERF096
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00521DAPTransfer from AT5G19790Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008804361.11e-37ethylene-responsive transcription factor ERN1-like
TrEMBLA0A0K9PV911e-160A0A0K9PV91_ZOSMR; Uncharacterized protein
STRINGXP_008804361.14e-37(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39003273
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.15e-17related to AP2 11