PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma170g00210.1

Common Name

ZOSMA_170G00210

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

LBD

Protein Properties

Length: 219aa MW: 24046.3 Da PI: 10.2141

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma170g00210.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	91.6	9.4e-29	54	142	1	101
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +CaaCk+lrr+C ++C+++pyf ++p+kfa vhk+FGasn r da++slvyeA++r+rdPvyG++g i++lqqq++ l+ae Zosma170g00210.1 54 PCAACKLLRRRCGQECPFSPYFSPHEPQKFASVHKVFGASN------------RFDAANSLVYEANVRIRDPVYGCMGAISTLQQQVQVLEAE 134 7***********************************997............7799******************************** PP DUF260 94 lallkeel 101 l+++++++ Zosma170g00210.1 135 LNMVRTQI 142 *99875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	15.85	53	142	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.8E-28	54	139	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence Send to blast
MLGCKSTAIS VYRERPDETS KRIKRDSSST TVVDRIGRRH GLGPSTGRLN NITPCAACKL 60 LRRRCGQECP FSPYFSPHEP QKFASVHKVF GASNRFDAAN SLVYEANVRI RDPVYGCMGA 120 ISTLQQQVQV LEAELNMVRT QILKLKYRRS SVNVLPTSHA AMVGRRGSST PFPPPSGPLP 180 PVTFSQFSDL SNSSSIYTLH SNSTDFSSIT TENLPFFG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-35	53	158	10	125	LOB family transfactor Ramosa2.1
5ly0_B	2e-35	53	158	10	125	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010921102.1	2e-77	LOB domain-containing protein 15 isoform X2
Swissprot	Q9AT61	2e-56	LBD13_ARATH; LOB domain-containing protein 13
TrEMBL	A0A0K9PUU3	1e-159	A0A0K9PUU3_ZOSMR; Putative LOB domain-containing protein
STRING	VIT_13s0067g02380.t01	2e-75	(Vitis vinifera)
STRING	XP_008782625.1	1e-75	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2630	38	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40470.1	2e-55	LOB domain-containing protein 15

Link Out ? help Back to Top
Phytozome	Zosma170g00210.1

Publications ? help Back to Top
Cho C,Jeon E,Pandey SK,Ha SH,Kim J LBD13 positively regulates lateral root formation in Arabidopsis. Planta, 2019. 249(4): p. 1251-1258 [PMID:30627888]