PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma170g00320.1

Common Name

ZOSMA_170G00320

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

LBD

Protein Properties

Length: 227aa MW: 24374.5 Da PI: 8.1606

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma170g00320.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	131.2	4.2e-41	15	115	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 +C aCk+lrrkC+++C++apyf +eq + +fa+vhk+FGasnv+k+l ++p+++r da+ +++yeA+ar+rdPvyG+v++i++lqqq+++l+a Zosma170g00320.1 15 PCGACKFLRRKCVSGCIFAPYFDSEQgAVHFAAVHKVFGASNVSKVLLHIPPHKRLDAVVTICYEAQARLRDPVYGCVAHIFTLQQQVANLQA 107 7*********************9989************************************************************* PP DUF260 93 elallkee 100 el++l+++ Zosma170g00320.1 108 ELSYLQTH 115 *99976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	23.329	14	116	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.2E-40	15	113	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010089	Biological Process	xylem development
GO:0010199	Biological Process	organ boundary specification between lateral organs and the meristem

Sequence ? help Back to Top
Protein Sequence Length: 227 aa Download sequence Send to blast
MSAKASGGGG GSAGPCGACK FLRRKCVSGC IFAPYFDSEQ GAVHFAAVHK VFGASNVSKV 60 LLHIPPHKRL DAVVTICYEA QARLRDPVYG CVAHIFTLQQ QVANLQAELS YLQTHLATLQ 120 LSFPSQQQPQ PDHLLSQQQP LSISDLPSSP ATLSTFFDLS TLFVDSQPGR QQQQVTGQFD 180 MKHMERSGSS SSGGNGGGDL QALARELVDR HWAASRNIEA GWKHSQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-39	11	116	7	111	LOB family transfactor Ramosa2.1
5ly0_B	1e-39	11	116	7	111	LOB family transfactor Ramosa2.1
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Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the positive regulation of tracheary element (TE) differentiation. Involved in a positive feedback loop that maintains or promotes NAC030/VND7 expression that regulates TE differentiation-related genes. {ECO:0000269\|PubMed:19088331}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009400358.1	5e-83	PREDICTED: LOB domain-containing protein 18-like
Swissprot	O81323	1e-67	LBD30_ARATH; LOB domain-containing protein 30
TrEMBL	A0A0K9PSQ9	1e-165	A0A0K9PSQ9_ZOSMR; Putative LOB domain protein 18
STRING	GSMUA_Achr5P11330_001	2e-82	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3346	37	82

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45420.1	3e-61	LOB domain-containing protein 18

Link Out ? help Back to Top
Phytozome	Zosma170g00320.1

Publications ? help Back to Top
Rast-Somssich MI, et al. The Arabidopsis JAGGED LATERAL ORGANS (JLO) gene sensitizes plants to auxin. J. Exp. Bot., 2017. 68(11): p. 2741-2755 [PMID:28472464] Liu C,Yu H,Li L SUMO modification of LBD30 by SIZ1 regulates secondary cell wall formation in Arabidopsis thaliana. PLoS Genet., 2019. 15(1): p. e1007928 [PMID:30657769]