PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma170g00540.1
Common NameZOSMA_170G00540
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family FAR1
Protein Properties Length: 93aa    MW: 10124.1 Da    PI: 5.7705
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma170g00540.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR125.93.3e-083876242
              FAR1  2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkre 42
                      +Y +YA  +GFsvrk +++++  ++  ++rt+vCske k++
  Zosma170g00540.1 38 CYYRYAGGIGFSVRKITTYSN--TEGLYRRTLVCSKERKSN 76
                      79**************99998..5569**********9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.5E-53876IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 93 aa     Download sequence    Send to blast
MDSSSLENND VDLQSSVTSI NHPSTGMSFN TLEDAENCYY RYAGGIGFSV RKITTYSNTE  60
GLYRRTLVCS KERKSNAIIP CSSTSSNVPQ NI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9PSI58e-61A0A0K9PSI5_ZOSMR; Uncharacterized protein