PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma171g00310.1

Common Name

ZOSMA_171G00310

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

bHLH

Protein Properties

Length: 211aa MW: 23835.9 Da PI: 6.3015

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma171g00310.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	30.2	8.2e-10	174	203	1	30
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC CS HLH 1 rrrahnerErrRRdriNsafeeLrellPka 30 +r++h ++Er+RR+ +N+ ++ Lr+l+P++ Zosma171g00310.1 174 QRMSHIAVERNRRRVMNDHLAALRSLMPPS 203 79**************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.62E-8	166	206	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.72E-7	172	207	No hit	No description
Gene3D	G3DSA:4.10.280.10	2.6E-8	172	205	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	11.706	173	210	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.7E-7	174	203	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 211 aa Download sequence Send to blast
MAGWASFSAA LQFYGDYMGL DCLEEDGQQQ QHITGIDSCF VDCNNDATAY DSSSVMDTAQ 60 CCYHQMPFLH MLQEKTALFV ELESHPETRH QQQPQPQTNS FQLLLRLQEE QLLLNRQPPP 120 PLPHAKISSL EIDSCVTADV AGVEKVKVEG EEKKKRKRCR SSSTAKKAEE AESQRMSHIA 180 VERNRRRVMN DHLAALRSLM PPSYIQRVSL *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	174	185	RMSHIAVERNRR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0K9PSA4	1e-156	A0A0K9PSA4_ZOSMR; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7957	33	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G01460.1	2e-15	bHLH family protein

Link Out ? help Back to Top
Phytozome	Zosma171g00310.1