PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma171g00350.1
Common NameZOSMA_171G00350
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family bHLH
Protein Properties Length: 210aa    MW: 23592.9 Da    PI: 9.8652
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma171g00350.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.92.4e-102571354
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                      ++h e+Er+RR+riN  +++ r+l+P+       K++Ka+ L ++v+ +++L
  Zosma171g00350.1 25 KSHREAERKRRERINAHLATFRTLVPNT-----NKMDKASLLMEVVRKMQEL 71
                      68*************************6.....5********9999888877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.57E-122177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.6592271IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-82571IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.8E-112678IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.7E-62877IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2602.6E-4120186No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MEVMMNNGLR SKPTSASTST GRITKSHREA ERKRRERINA HLATFRTLVP NTNKMDKASL  60
LMEVVRKMQE LRKYADNILQ LSPNGWMNEV LPGEVDQVGI DEIMNEEEED SNPDSLRRRG  120
LKVSFCCEDR PGLMSEVQQA IKRSVNARAV RADMATVGGR TKSVVVLEGE VEGKERSILH  180
SSLKEVVHKN NSPFGINNRF SMGISFSYQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13035ERKRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9PUL91e-152A0A0K9PUL9_ZOSMR; Basic helix-loop-helix (BHLH) DNA-binding superfamily
STRINGMLOC_2366.11e-42(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP41143569
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56770.19e-28bHLH family protein