PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma174g00360.1
Common NameZOSMA_174G00360
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family C2H2
Protein Properties Length: 496aa    MW: 52776.4 Da    PI: 8.491
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma174g00360.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.4e-056385123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      ++C++C+k F r  nL+ H r H
  Zosma174g00360.1 63 FVCEICNKGFQRDQNLQLHRRGH 85
                      89*******************88 PP
2zf-C2H213.50.00021139161123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       +kC +C+k +  +s+ k H +t+
  Zosma174g00360.1 139 WKCDKCSKKYAVQSDWKAHYKTC 161
                       58*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.91E-76285No hitNo description
Gene3DG3DSA:3.30.160.601.6E-56285IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.9496385IPR007087Zinc finger, C2H2
PfamPF121717.9E-56385IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.0176385IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806585IPR007087Zinc finger, C2H2
SMARTSM00355230104134IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.0E-4127160IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576678.91E-7134159No hitNo description
SMARTSM0035595139159IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009937Biological Processregulation of gibberellic acid mediated signaling pathway
GO:0010029Biological Processregulation of seed germination
GO:0010431Biological Processseed maturation
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 496 aa     Download sequence    Send to blast
MTVSNSGSCE PSAPSTSHKP APKVASLPPP AVGKKKRNLP GMPDPDAEVI ALSPRTLMAT  60
NRFVCEICNK GFQRDQNLQL HRRGHNLPWK LRQRTNKDVK KRVYVCPEPS CVHHDSSRAL  120
GDLTGIKKHF CRKHGEKKWK CDKCSKKYAV QSDWKAHYKT CGSREYRCDC GTLFSRRDSF  180
ITHRAFCDAL AEESAKVMQQ STSCLIPAVS GTSEEDPMVM VPSPPPILQA PPAESEKKHQ  240
NELESDIIAP PPAHTTTASL FASLFSSSSA EATQSPASTF ADLMGAMSTN SQHSGFITLP  300
TTSQMFDRGA GGSSTLAPTS GGYVSVLNPP PPSPHMSATA LLQKAAQMGA AATNSSSLRG  360
FGLSTSSTID NQERSEEEEF HENYQWRSQL HPHGLDLGLP YNSIGGIGCG GGLPELSSLC  420
VAKPATLDFL GLGMVGPESS GDGLSALWSS IDVVSAGGGV GRFGSGGSSS VSMSINGNGT  480
RNGGNESNNR MKRRL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-34135197365Zinc finger protein JACKDAW
5b3h_F3e-34135197365Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00592DAPTransfer from AT5G66730Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020690375.11e-152zinc finger protein GAI-ASSOCIATED FACTOR 1 isoform X1
SwissprotQ9LVQ71e-127IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBLA0A0K9PRZ60.0A0A0K9PRZ6_ZOSMR; Zinc finger protein NUTCRACKER
STRINGVIT_18s0001g12220.t011e-148(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66730.11e-104C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]