PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma176g00400.1
Common NameZOSMA_176G00400
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family GATA
Protein Properties Length: 221aa    MW: 24218.2 Da    PI: 10.6274
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma176g00400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.15.1e-1895128134
              GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                       C+ C+ttkTplWR gp g+ktLCnaCG++y k +
  Zosma176g00400.1  95 CVDCQTTKTPLWRTGPIGPKTLCNACGIRYMKLR 128
                       ******************************8876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.6E-1489142IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.52E-1393130No hitNo description
Gene3DG3DSA:3.30.50.105.0E-1694129IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.36E-1394130No hitNo description
PROSITE patternPS00344095120IPR000679Zinc finger, GATA-type
PfamPF003202.1E-1595129IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.16395124IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MMLARGWGAQ HNRGSSGGSD IRRRMMTLLG VDLFKCSRKK RRRRRSRLEL ESGMRVKLSM  60
DDGTGEVDVD VVELELEGSG STADGIDVGD CIKVCVDCQT TKTPLWRTGP IGPKTLCNAC  120
GIRYMKLRRK GLVQNNMMKS KSGSKVGVNL SKSSPTSTSM SANEVEMLKR KQKKKQEVIW  180
SLLQQSRKFA STCGKEEAEA AVLLMALSTG LFLHSSSPNV *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12143RRRMMTLLGVDLFKCSRKKRRRR
23743RKKRRRR
33844KKRRRRR
43944KRRRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9PS081e-158A0A0K9PS08_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24183892
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49300.12e-18GATA transcription factor 16