PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma177g00200.1
Common NameZOSMA_177G00200
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family bHLH
Protein Properties Length: 207aa    MW: 23686.5 Da    PI: 4.6535
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma177g00200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.12.8e-12146192455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       a n +Er+RR++iN+++  L +l+P +     +K sK  +L +  +YIk+Lq
  Zosma177g00200.1 146 ARNFNERKRRRDINNKIKALHDLVPVC-----QKTSKECMLDEIYNYIKYLQ 192
                       7899**********************9.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.037142191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-14145198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.39E-7146190No hitNo description
PfamPF000109.4E-10146192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.49E-15146198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.2E-11148197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MEMNFNGEEW WNNQVHESDE WKELGAWISK EIIENQDVDD MDRFPGAVLP DVAEMVNKAT  60
HVATNFSTLS PLSQLFQINP SEIQEGFLQD YQVTDITSPL ITNTNYHASD DDDDEGKIGA  120
NDKKRIRLTD NQNVMPSSSC QTSAAARNFN ERKRRRDINN KIKALHDLVP VCQKTSKECM  180
LDEIYNYIKY LQLQLQKLCL LTGKGR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1151155RKRRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9PTY51e-153A0A0K9PTY5_ZOSMR; Uncharacterized protein