PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma1787g00010.1

Common Name

ZOSMA_1787G00010

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

NF-YB

Protein Properties

Length: 273aa MW: 30514.6 Da PI: 4.7409

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma1787g00010.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	113.8	9.4e-36	1	74	24	97
NF-YB 24 nakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 nakisk+aket+qecvsef+s++t+eas+kc+ ekrktingddllw++ l f+ y plk+yl+kyre e+e+ Zosma1787g00010.1 1 NAKISKEAKETIQECVSEFVSYITGEASEKCHSEKRKTINGDDLLWSMYRLDFDSYTIPLKIYLEKYRESERER 74 79*********************************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.7E-36	1	96	IPR009072	Histone-fold
SuperFamily	SSF47113	1.46E-27	1	96	IPR009072	Histone-fold
Pfam	PF00808	1.4E-16	2	48	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	1.2E-16	12	30	No hit	No description
PRINTS	PR00615	1.2E-16	31	49	No hit	No description
PRINTS	PR00615	1.2E-16	50	68	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence Send to blast
NAKISKEAKE TIQECVSEFV SYITGEASEK CHSEKRKTIN GDDLLWSMYR LDFDSYTIPL 60 KIYLEKYRES ERERSNNSPS QQTQQPQQAH QPIQQRQPPL AQQPPNKRMR MDINGASSSG 120 TGLGIDNDRY AIPTGRNCND YGNNYTGMMD PTAHYIYPSV GETSYSMSNL GGGNYGMSES 180 SLYGGFDPSI YRSNNEFGSL KNGGERFPIM RERCDSRTEE AGDLMEMFSS KIDEANKNEG 240 MGGDISSAIY QNYLYSDTLP TMEPPQPPSP GK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1n1j_A	2e-28	3	69	27	93	NF-YB
4awl_B	2e-28	3	69	28	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A	2e-28	3	69	28	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0K9PRJ3	0.0	A0A0K9PRJ3_ZOSMR; Uncharacterized protein (Fragment)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14540.1	1e-32	nuclear factor Y, subunit B3

Link Out ? help Back to Top
Phytozome	Zosma1787g00010.1