PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma1787g00020.1

Common Name

ZOSMA_1787G00020

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

NF-YB

Protein Properties

Length: 310aa MW: 34246.9 Da PI: 5.24

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma1787g00020.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	156.6	4.2e-49	16	110	3	97
NF-YB 3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 drflPianvsrimk++lP nakisk+aket+qecvsef+sf+t+eas+kc+ ekrktingddllw++ l f+ y plk+yl+kyre e Zosma1787g00020.1 16 RSDRFLPIANVSRIMKRALPINAKISKEAKETIQECVSEFVSFITGEASEKCHSEKRKTINGDDLLWSMYRLDFDSYTIPLKIYLEKYRESE 107 579***************************************************************************************** PP NF-YB 95 gek 97 +e+ Zosma1787g00020.1 108 RER 110 997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.5E-49	15	136	IPR009072	Histone-fold
SuperFamily	SSF47113	3.04E-37	18	129	IPR009072	Histone-fold
Pfam	PF00808	2.1E-25	20	84	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	3.1E-17	48	66	No hit	No description
PRINTS	PR00615	3.1E-17	67	85	No hit	No description
PRINTS	PR00615	3.1E-17	86	104	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 310 aa Download sequence Send to blast
MVGSSSNSNP GRDASRSDRF LPIANVSRIM KRALPINAKI SKEAKETIQE CVSEFVSFIT 60 GEASEKCHSE KRKTINGDDL LWSMYRLDFD SYTIPLKIYL EKYRESERER SNNSLSQQTQ 120 QPQQAHQPIQ QRQPPLAQQP QNKRMCMDIN DASSSGAGLG IDNDIYAIPT GRNCNDYGNG 180 YTGMMDPTAH YTYPTFGGTN YSISNVVGGN YGMSESSLYG GLDPSIYRSN INEVGSSKNG 240 GERFPTMREG CDIRTEEAGD LMAKFSSKID EANKNEGMGG DISRAIYQNY LYSDTLPTME 300 PPQPPSPGK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_B	1e-38	18	105	7	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A	1e-38	18	105	7	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0K9PRV4	0.0	A0A0K9PRV4_ZOSMR; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14540.1	6e-47	nuclear factor Y, subunit B3

Link Out ? help Back to Top
Phytozome	Zosma1787g00020.1